Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Forward (+)

20214640 .. 20217505

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAATGAACATTATAATGGCCAAACTACCCTCACCCATCTGAAAAGCACAAGATCTAAGATCCAGAAGCATTGCGCTTCACTAAATCGTCAATGCGGTGCTGACGTTTGCTCATCTGAAGGTGAGTTTCCGAATTTCCATCTCCGTTTCCGATTCAATTCTTTCGTAGCTTTCTGTTTGTTTCGCGGGAAAATTAGAATTGGAATCAGAAGCTCTTTGGCTCGCATTTTCGCTACTGAATTTTTGGATTCATTTCCTGCGAAGAAGACAACAGTCATGTCGAGAAGGCAGGTGGGATCCACGCGCCGGAACGCGAACTTTCCGTTTGCCGGAGCCTTCAATTCGAAATCGAAGTCATCTCCTTTGTTATCCATAGGGCTTGTAGTTGTGGGAGCTATTCTTCTAATCGGCTATGTTTATAAAGGCTCAGGTGCCTTTGGGGGTAGCAAAGTTGTTAGCAGAGTTGAAGGGGACTTCTCATGCACGTCAGAAGTTCAGAGAGCGATACCTTTTCTGCAGAAAGCGTATAGTGGTAGCATGCACAAAGTTCTGCACATTGGCCCTGATACTTGTTCAGTTGTCTCTGCGTTGTTGAAAGAAGAGGAAACTGAAGCATGGGGAGTGGAACCATATGAGCTAGAGGATGCTGATAGCCATTGCAAGAGTCTTGTGCGTAAAGGCATTGTGCGTGTGGCTGACATTAAGTTCCCTCTACCATACAAAGCAAAGTCTTTCTCCCTTGTGATTGTTTCAGATGCTTTGGATTATCTCTCCCCAAAATATCTGAATAGGACTCTTCCAGAAATTGCAAGAGTGTCTATTGATGGTCTTGTTATTTTTTCAGGTTTCCCAGGTCAACAGAAAGCTAAAGTTTCTGAATTGTCAAAATTTGGACGTCCTGCCAAAATGAGGAGTGCTTCTTGGTGGGTACGCTATTTTGTTCAGACCAGCTTAGAAGAAAATGAAGCTGCGAGCAAGAAGTTTGAGCAGGCAGCAAAAAAAGGGTCGTACCAGCCAAGCTGTCAAGTGTTTCACCTTAACTCATATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009664 GO:0009832 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010109 GO:0010393 GO:0010394 GO:0012505 GO:0015976 GO:0016020 GO:0016043 GO:0016051 GO:0017144 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0040007 GO:0040008 GO:0042546 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043576 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045927 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048638 GO:0048639 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0055035 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099402 GO:1901576 GO:1903942 GO:1905157 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MetW

Protein Analysis

351

Amino Acids

38.9

Weight (kDa)

9.63

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	15, 420
AarI	CACCTGC	1 cut(s)	280
AatII	GACGTC	1 cut(s)	898
Acc36I	ACCTGC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	431
AccII	CGCG	3 cut(s)	186, 304, 314
AciI	CCGC	2 cut(s)	96, 186
AclWI	GGATC	3 cut(s)	55, 291, 304
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	3 cut(s)	133, 239, 887
AcuI	CTGAAG	2 cut(s)	138, 630
AcyI	GRCGYC	1 cut(s)	895
AfaI	GTAC	2 cut(s)	930, 1010
AfiI	CCNNNNNNNGG	3 cut(s)	306, 329, 909
AgsI	TTSAA	4 cut(s)	157, 340, 467, 595
AjiI	CACGTC	1 cut(s)	486
AjnI	CCWGG	1 cut(s)	850
AluBI	AGCT	8 cut(s)	170, 213, 395, 637, 866, 951, 968, 1020
AluI	AGCT	8 cut(s)	170, 213, 395, 637, 866, 951, 968, 1020
Alw26I	GTCTC	1 cut(s)	586
AlwI	GGATC	3 cut(s)	55, 291, 304
AoxI	GGCC	2 cut(s)	19, 559
ApeKI	GCWGC	2 cut(s)	968, 992
ApoI	RAATTY	3 cut(s)	133, 239, 887
ArsI	GACNNNNNNTTYG	4 cut(s)	338, 370, 989, 1021
AspLEI	GCGC	2 cut(s)	77, 306
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	3 cut(s)	25, 134, 1025
AsuII	TTCGAA	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	21
BamHI	GGATCC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	955, 1004
BccI	CCATC	3 cut(s)	45, 147, 818
BciT130I	CCWGG	1 cut(s)	852
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	1 cut(s)	638
BfmI	CTRYAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	280
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	2 cut(s)	969, 993
BlsI	GCNGC	2 cut(s)	970, 994
Bme1390I	CCNGG	1 cut(s)	852
BmgBI	CACGTC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	4 cut(s)	298, 334, 433, 627
BmrFI	CCNGG	1 cut(s)	852
BmsI	GCATC	2 cut(s)	634, 745
BoxI	GACNNNNGTC	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	427
Bpu14I	TTCGAA	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	895
BsaJI	CCNNGG	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 329, 909
Bse3DI	GCAATG	2 cut(s)	70, 655
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	850
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	3 cut(s)	306, 329, 909
BseMI	GCAATG	2 cut(s)	70, 655
BseMII	CTCAG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	925
BseXI	GCAGC	2 cut(s)	955, 1004
BsgI	GTGCAG	1 cut(s)	536
Bsh1236I	CGCG	3 cut(s)	186, 304, 314
BshFI	GGCC	2 cut(s)	21, 561
BshNI	GGYRCC	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	307, 330
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	3 cut(s)	306, 329, 909
BsmAI	GTCTC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	21, 561
Bsp119I	TTCGAA	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	53, 60, 296
BspACI	CCGC	2 cut(s)	96, 186
BspANI	GGCC	2 cut(s)	21, 561
BspCNI	CTCAG	1 cut(s)	440
BspFNI	CGCG	3 cut(s)	186, 304, 314
BspLI	GGNNCC	4 cut(s)	298, 334, 433, 627
BspMAI	CTGCAG	1 cut(s)	519
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	3 cut(s)	55, 291, 304
BspT104I	TTCGAA	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	431
BsrDI	GCAATG	2 cut(s)	70, 655
BssECI	CCNNGG	1 cut(s)	850
BssMI	GATC	3 cut(s)	53, 60, 296
BssNI	GRCGYC	1 cut(s)	895
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	594, 801
BstACI	GRCGYC	1 cut(s)	895
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	223, 539, 973, 990
BstDEI	CTNAG	3 cut(s)	57, 427, 952
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	3 cut(s)	186, 304, 314
BstHHI	GCGC	2 cut(s)	77, 306
BstKTI	GATC	3 cut(s)	56, 63, 299
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	3 cut(s)	53, 60, 296
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	541
BstPAI	GACNNNNGTC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	850
BstSFI	CTRYAG	1 cut(s)	515
BstUI	CGCG	3 cut(s)	186, 304, 314
BstV1I	GCAGC	2 cut(s)	955, 1004
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	3 cut(s)	53, 60, 296
BstYI	RGATCY	3 cut(s)	53, 60, 296
BsuRI	GGCC	2 cut(s)	21, 561
BtrI	CACGTC	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	649
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	4 cut(s)	223, 539, 973, 990
CfoI	GCGC	2 cut(s)	77, 306
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	929, 1009
CviAII	CATG	4 cut(s)	277, 480, 538, 615
CviQI	GTAC	2 cut(s)	929, 1009
DdeI	CTNAG	3 cut(s)	57, 427, 952
DpnI	GATC	3 cut(s)	55, 62, 298
DpnII	GATC	3 cut(s)	53, 60, 296
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	2 cut(s)	594, 801
EarI	CTCTTC	2 cut(s)	594, 801
Eco57I	CTGAAG	2 cut(s)	138, 630
EcoRII	CCWGG	1 cut(s)	850
FaeI	CATG	4 cut(s)	280, 483, 541, 618
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	4 cut(s)	276, 479, 537, 614
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	969, 993
FokI	GGATG	1 cut(s)	656
Fsp4HI	GCNGC	2 cut(s)	969, 993
FspBI	CTAG	1 cut(s)	638
GlaI	GCGC	2 cut(s)	76, 305
GluI	GCNGC	2 cut(s)	969, 993
HaeIII	GGCC	2 cut(s)	21, 561
HapII	CCGG	2 cut(s)	307, 330
HhaI	GCGC	2 cut(s)	77, 306
Hin1I	GRCGYC	1 cut(s)	895
Hin1II	CATG	4 cut(s)	280, 483, 541, 618
Hin6I	GCGC	2 cut(s)	75, 304
HinP1I	GCGC	2 cut(s)	75, 304
HincII	GTYRAC	1 cut(s)	857
HindII	GTYRAC	1 cut(s)	857
HinfI	GANTC	5 cut(s)	153, 204, 248, 664, 793
HpaII	CCGG	2 cut(s)	307, 330
HphI	GGTGA	3 cut(s)	25, 134, 1025
Hpy166II	GTNNAC	1 cut(s)	857
Hpy188III	TCNNGA	3 cut(s)	64, 282, 800
Hpy8I	GTNNAC	1 cut(s)	857
HpyAV	CCTTC	4 cut(s)	113, 279, 346, 461
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	3 cut(s)	105, 485, 895
HpyCH4V	TGCA	6 cut(s)	483, 517, 541, 553, 660, 809
HpyF3I	CTNAG	3 cut(s)	57, 427, 952
HpySE526I	ACGT	3 cut(s)	105, 485, 895
Hsp92I	GRCGYC	1 cut(s)	895
Hsp92II	CATG	4 cut(s)	280, 483, 541, 618
HspAI	GCGC	2 cut(s)	75, 304
Kzo9I	GATC	3 cut(s)	53, 60, 296
LmnI	GCTCC	2 cut(s)	332, 392
Lsp1109I	GCAGC	2 cut(s)	955, 1004
LweI	GCATC	2 cut(s)	634, 745
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	3 cut(s)	105, 485, 895
MalI	GATC	3 cut(s)	55, 62, 298
MboI	GATC	3 cut(s)	53, 60, 296
MboII	GAAGA	6 cut(s)	274, 277, 392, 611, 788, 968
MflI	RGATCY	3 cut(s)	53, 60, 296
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	9 cut(s)	133, 157, 192, 198, 239, 340, 804, 878, 887
MluNI	TGGCCA	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	673, 787
MnlI	CCTC	5 cut(s)	41, 595, 634, 720, 903
Mox20I	TGGCCA	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	2 cut(s)	702, 1038
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	21
MspI	CCGG	2 cut(s)	307, 330
MspR9I	CCNGG	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	852
MvnI	CGCG	3 cut(s)	186, 304, 314
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	3 cut(s)	53, 60, 296
NlaIII	CATG	4 cut(s)	280, 483, 541, 618
NlaIV	GGNNCC	4 cut(s)	298, 334, 433, 627
NspI	RCATGY	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	541
PaqCI	CACCTGC	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	153, 204, 248
PkrI	GCNGC	2 cut(s)	970, 994
PleI	GAGTC	2 cut(s)	672, 787
PpsI	GAGTC	2 cut(s)	672, 787
PshAI	GACNNNNGTC	1 cut(s)	272
PsiI	TTATAA	2 cut(s)	15, 420
Psp6I	CCWGG	1 cut(s)	850
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	4 cut(s)	298, 334, 433, 627
PspPI	GGNCC	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	519
PsuI	RGATCY	3 cut(s)	53, 60, 296
RsaI	GTAC	2 cut(s)	930, 1010
RsaNI	GTAC	2 cut(s)	929, 1009
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	702, 1038
SatI	GCNGC	2 cut(s)	969, 993
Sau3AI	GATC	3 cut(s)	53, 60, 296
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	2 cut(s)	673, 787
ScrFI	CCNGG	1 cut(s)	852
SfaNI	GCATC	2 cut(s)	634, 745
SfcI	CTRYAG	1 cut(s)	515
SfuI	TTCGAA	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	15
SphI	GCATGC	1 cut(s)	541
Sse9I	AATT	9 cut(s)	133, 157, 192, 198, 239, 340, 804, 878, 887
SsiI	CCGC	2 cut(s)	96, 186
SspMI	CTAG	1 cut(s)	638
StyD4I	CCNGG	1 cut(s)	850
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	3 cut(s)	108, 488, 898
TaqI	TCGA	3 cut(s)	281, 344, 350
TasI	AATT	9 cut(s)	133, 157, 192, 198, 239, 340, 804, 878, 887
TfiI	GAWTC	3 cut(s)	153, 204, 248
Tru1I	TTAA	2 cut(s)	702, 1038
Tru9I	TTAA	2 cut(s)	702, 1038
TseI	GCWGC	2 cut(s)	968, 992
TspDTI	ATGAA	4 cut(s)	17, 21, 240, 978
TspGWI	ACGGA	2 cut(s)	134, 312
XapI	RAATTY	3 cut(s)	133, 239, 887
XceI	RCATGY	1 cut(s)	541
XspI	CTAG	1 cut(s)	638
ZraI	GACGTC	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.