Rroxscaffold_3G00255070

At3g49720-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000825
Physical Location & Seq
Reverse (-)
49342438 .. 49343843
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255070.1

Sequence Viewer

Length: 312 bp
ATGGCTCTCGTTGTTACTTCTTCTTCGTGTTCTACTGCAATCTCTGCTTGGACCTTCTCCTCCGACCTCAAAGGTGATTACTCATGCGCAACGGAGGTCCGACAAGCAATTCATGTTTTGAAGAAAGCATATGGTGACAGCATGCATAAGGTTTTACATGTTGGCCCCGATACTTGTACTGTGCGCTTTTGTGATTACTCATGTGCAACAGAGGTCCGGCAAGCAATTCATGTTTTGAAGAAAGCATATGGTGACAGCATGCATAAGGTTTTACATGTTGGCCCCGGTACTTGTACTGTGCACTTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pentapeptide

Protein Analysis

103

Amino Acids

11.2

Weight (kDa)

8.19

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 88
AfaI GTAC 3 cut(s) 178, 289, 295
AflIII ACRYGT 2 cut(s) 157, 274
AgsI TTSAA 2 cut(s) 121, 238
Alw21I GWGCWC 1 cut(s) 303
Alw44I GTGCAC 1 cut(s) 299
AoxI GGCC 2 cut(s) 163, 280
ApaLI GTGCAC 1 cut(s) 299
AspLEI GCGC 2 cut(s) 89, 186
AspS9I GGNCC 5 cut(s) 51, 97, 164, 214, 281
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 86, 146, 263
AvaII GGWCC 3 cut(s) 51, 97, 214
BaeGI GKGCMC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 303
BcnI CCSGG 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 3 cut(s) 51, 97, 214
BmgT120I GGNCC 5 cut(s) 51, 97, 164, 214, 281
BmiI GGNNCC 2 cut(s) 166, 283
BmrFI CCNGG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 303
BshFI GGCC 2 cut(s) 165, 282
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 217, 285
BsnI GGCC 2 cut(s) 165, 282
Bsp1286I GDGCHC 1 cut(s) 303
BspANI GGCC 2 cut(s) 165, 282
BspLI GGNNCC 2 cut(s) 166, 283
BssECI CCNNGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 181, 298
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 143, 222, 260
BstHHI GCGC 2 cut(s) 89, 186
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 4 cut(s) 145, 161, 262, 278
BstSCI CCNGG 1 cut(s) 283
BstSLI GKGCMC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 165, 282
Cac8I GCNNGC 3 cut(s) 143, 222, 260
CfoI GCGC 2 cut(s) 89, 186
Cfr13I GGNCC 5 cut(s) 51, 97, 164, 214, 281
Csp6I GTAC 3 cut(s) 177, 288, 294
CviAII CATG 8 cut(s) 84, 113, 142, 158, 201, 230, 259, 275
CviJI RGCY 3 cut(s) 5, 165, 282
CviKI_1 RGCY 3 cut(s) 5, 165, 282
CviQI GTAC 3 cut(s) 177, 288, 294
Eco47I GGWCC 3 cut(s) 51, 97, 214
EcoT22I ATGCAT 2 cut(s) 147, 264
FaeI CATG 8 cut(s) 87, 116, 145, 161, 204, 233, 262, 278
FatI CATG 8 cut(s) 83, 112, 141, 157, 200, 229, 258, 274
FauNDI CATATG 2 cut(s) 130, 247
FspI TGCGCA 1 cut(s) 88
GlaI GCGC 2 cut(s) 88, 185
HaeIII GGCC 2 cut(s) 165, 282
HapII CCGG 2 cut(s) 217, 285
HhaI GCGC 2 cut(s) 89, 186
Hin1II CATG 8 cut(s) 87, 116, 145, 161, 204, 233, 262, 278
Hin6I GCGC 2 cut(s) 87, 184
HinP1I GCGC 2 cut(s) 87, 184
HpaII CCGG 2 cut(s) 217, 285
HphI GGTGA 3 cut(s) 86, 146, 263
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 64, 101
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 181, 298
HpyCH4V TGCA 5 cut(s) 38, 145, 206, 262, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 8 cut(s) 87, 116, 145, 161, 204, 233, 262, 278
HspAI GCGC 2 cut(s) 87, 184
LpnPI CCDG 2 cut(s) 230, 298
MaeIII GTNAC 3 cut(s) 13, 134, 251
MboII GAAGA 4 cut(s) 12, 15, 133, 250
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 2 cut(s) 108, 225
MmeI TCCRAC 2 cut(s) 87, 124
MnlI CCTC 4 cut(s) 70, 77, 88, 205
Mph1103I ATGCAT 2 cut(s) 147, 264
MspI CCGG 2 cut(s) 217, 285
MspR9I CCNGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 285
NdeI CATATG 2 cut(s) 130, 247
NlaIII CATG 8 cut(s) 87, 116, 145, 161, 204, 233, 262, 278
NlaIV GGNNCC 2 cut(s) 166, 283
NmuCI GTSAC 2 cut(s) 134, 251
NsbI TGCGCA 1 cut(s) 88
NsiI ATGCAT 2 cut(s) 147, 264
NspI RCATGY 4 cut(s) 145, 161, 262, 278
PaeI GCATGC 2 cut(s) 145, 262
PciI ACATGT 2 cut(s) 157, 274
PscI ACATGT 2 cut(s) 157, 274
PspN4I GGNNCC 2 cut(s) 166, 283
PspPI GGNCC 5 cut(s) 51, 97, 164, 214, 281
RsaI GTAC 3 cut(s) 178, 289, 295
RsaNI GTAC 3 cut(s) 177, 288, 294
Sau96I GGNCC 5 cut(s) 51, 97, 164, 214, 281
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 303
SetI ASST 7 cut(s) 56, 69, 76, 99, 153, 216, 270
SinI GGWCC 3 cut(s) 51, 97, 214
SphI GCATGC 2 cut(s) 145, 262
Sse9I AATT 2 cut(s) 108, 225
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 181, 298
TasI AATT 2 cut(s) 108, 225
TatI WGTACW 2 cut(s) 176, 293
TseFI GTSAC 2 cut(s) 134, 251
Tsp45I GTSAC 2 cut(s) 134, 251
TspDTI ATGAA 2 cut(s) 101, 218
TspGWI ACGGA 1 cut(s) 107
VneI GTGCAC 1 cut(s) 299
VpaK11BI GGWCC 3 cut(s) 51, 97, 214
XceI RCATGY 4 cut(s) 145, 161, 262, 278
Zsp2I ATGCAT 2 cut(s) 147, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.