Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Reverse (-)

26337665 .. 26339865

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCAAGAAGGCAAGTAAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCTCTGCATTCAAAATCACGTTCGTCTCCTCTGTTATCAGTTTGCCTTGTTCTCGTGGGAGCATGCCTTCTCATTGGTTATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATCAGAGAAGTCAGCAAGATTACAGGTGACTATTCTTGCACAGCAGAAGTTCAAAGAGCCATTCCTATTCTTAAGAGTGCGTATGGAGATAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCAGTGGTCTCGAGTCTGTTGAATGAAGAAGAGACAGAAGCATGGGGTGTTGAACCATATGATGTGGAGGATGCAGACTCTAACTGCAAAAGTCTTTTGCACAAGGGCCTTGTACGTGTGGCTGACATCAAATTCCCTCTTCCTTACCGGTCAAAGTCGTTTTCTCTTGTGATCGTCTCAGACGCTTTGGATTACCTCTCACCCAGGTACCTGAACAAAACTGTGCCTGAACTTGCTCGCGTCGCTTCAGATGGTGTCGTTCTTTTAGCAGGTAACCCTGGTCAACAAAAGGCTAAAGGTGGGGAATTGTCGAAATTTGGACGGCCTGCTAAAATGCGTAGCTCGTCGTGGTGGATCCGTTTCTTCTCACAGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCTTCCAAGAGTTCATACAAACCAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009664 GO:0009832 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010109 GO:0010393 GO:0010394 GO:0012505 GO:0015976 GO:0016020 GO:0016043 GO:0016051 GO:0017144 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0040007 GO:0040008 GO:0042546 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043576 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045927 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048638 GO:0048639 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0055035 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099402 GO:1901576 GO:1903942 GO:1905157 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MetW Methyltransf_11

Protein Analysis

258

Amino Acids

28.3

Weight (kDa)

9.24

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	557
Acc65I	GGTACC	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	504
AccII	CGCG	1 cut(s)	537
AclWI	GGATC	2 cut(s)	646, 659
AcsI	RAATTY	3 cut(s)	428, 611, 704
AcuI	CTGAAG	1 cut(s)	528
AcvI	CACGTG	1 cut(s)	280
AfaI	GTAC	2 cut(s)	411, 506
AfiI	CCNNNNNNNGG	2 cut(s)	53, 280
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	412
AgeI	ACCGGT	1 cut(s)	444
AgsI	TTSAA	5 cut(s)	69, 163, 221, 319, 350
AjnI	CCWGG	3 cut(s)	151, 500, 574
AluBI	AGCT	5 cut(s)	42, 59, 639, 719, 743
AluI	AGCT	5 cut(s)	42, 59, 639, 719, 743
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	4 cut(s)	87, 310, 323, 478
AlwI	GGATC	2 cut(s)	646, 659
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	2 cut(s)	403, 620
ApeKI	GCWGC	2 cut(s)	692, 716
ApoI	RAATTY	3 cut(s)	428, 611, 704
AsiGI	ACCGGT	1 cut(s)	444
Asp718I	GGTACC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	3 cut(s)	149, 284, 403
AsuHPI	GGTGA	2 cut(s)	206, 489
AsuII	TTCGAA	1 cut(s)	708
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	149, 284
BaeI	ACNNNNGTAYC	2 cut(s)	488, 521
BamHI	GGATCC	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	110
BbrPI	CACGTG	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	704, 728
BccI	CCATC	1 cut(s)	542
BceAI	ACGGC	1 cut(s)	635
BcgI	CGANNNNNNTGC	2 cut(s)	688, 722
BciT130I	CCWGG	3 cut(s)	153, 502, 576
BcoDI	GTCTC	4 cut(s)	87, 310, 323, 478
BfrI	CTTAAG	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	2 cut(s)	693, 717
BlsI	GCNGC	2 cut(s)	694, 718
Bme1390I	CCNGG	3 cut(s)	153, 502, 576
Bme18I	GGWCC	2 cut(s)	149, 284
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	3 cut(s)	149, 284, 403
BmiI	GGNNCC	3 cut(s)	285, 506, 653
BmrFI	CCNGG	3 cut(s)	153, 502, 576
BmsI	GCATC	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	746
BsaAI	YACGTR	2 cut(s)	280, 413
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	500, 574
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 280
Bse118I	RCCGGY	1 cut(s)	444
BseBI	CCWGG	3 cut(s)	153, 502, 576
BseDI	CCNNGG	2 cut(s)	500, 574
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	53, 280
BseMII	CTCAG	2 cut(s)	312, 489
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	704, 728
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	405, 622
BshNI	GGYRCC	1 cut(s)	504
BshTI	ACCGGT	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	53, 280
BsmAI	GTCTC	4 cut(s)	87, 310, 323, 478
BsmBI	CGTCTC	2 cut(s)	87, 478
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	405, 622
Bso31I	GGTCTC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	468, 651
BspANI	GGCC	2 cut(s)	405, 622
BspCNI	CTCAG	2 cut(s)	311, 488
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	3 cut(s)	285, 506, 653
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	2 cut(s)	646, 659
BspT104I	TTCGAA	1 cut(s)	708
BspT107I	GGYRCC	1 cut(s)	504
BspTI	CTTAAG	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	500, 574
BssMI	GATC	2 cut(s)	468, 651
BssSI	CACGAG	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	110
Bst2UI	CCWGG	3 cut(s)	153, 502, 576
Bst4CI	ACNGT	2 cut(s)	146, 520
Bst6I	CTCTTC	2 cut(s)	321, 441
BstAFI	CTTAAG	1 cut(s)	239
BstBAI	YACGTR	2 cut(s)	280, 413
BstBI	TTCGAA	1 cut(s)	708
BstC8I	GCNNGC	5 cut(s)	121, 263, 535, 624, 697
BstDEI	CTNAG	3 cut(s)	298, 475, 676
BstEII	GGTNACC	1 cut(s)	569
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	471, 654
BstMAI	GTCTC	4 cut(s)	87, 310, 323, 478
BstMBI	GATC	2 cut(s)	468, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 539
BstNI	CCWGG	3 cut(s)	153, 502, 576
BstNSI	RCATGY	3 cut(s)	123, 265, 297
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	3 cut(s)	151, 500, 574
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	704, 728
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	405, 622
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	151, 306
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	5 cut(s)	121, 263, 535, 624, 697
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	444
Cfr13I	GGNCC	3 cut(s)	149, 284, 403
CseI	GACGC	2 cut(s)	488, 526
Csp6I	GTAC	2 cut(s)	410, 505
CspAI	ACCGGT	1 cut(s)	444
CviAII	CATG	4 cut(s)	120, 262, 294, 339
CviQI	GTAC	2 cut(s)	410, 505
DdeI	CTNAG	3 cut(s)	298, 475, 676
DpnI	GATC	2 cut(s)	470, 653
DpnII	GATC	2 cut(s)	468, 651
Eam1104I	CTCTTC	2 cut(s)	321, 441
EarI	CTCTTC	2 cut(s)	321, 441
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	149, 284
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	528
Eco72I	CACGTG	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	307
Eco91I	GGTNACC	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	59
EcoO109I	RGGNCCY	2 cut(s)	284, 403
EcoO65I	GGTNACC	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	151, 500, 574
EcoT38I	GRGCYC	1 cut(s)	61
Esp3I	CGTCTC	2 cut(s)	87, 478
FaeI	CATG	4 cut(s)	123, 265, 297, 342
FatI	CATG	4 cut(s)	119, 261, 293, 338
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	693, 717
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	693, 717
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	693, 717
HaeIII	GGCC	2 cut(s)	405, 622
HapII	CCGG	1 cut(s)	445
HgaI	GACGC	2 cut(s)	488, 526
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	123, 265, 297, 342
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	581
HindII	GTYRAC	1 cut(s)	581
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	2 cut(s)	310, 374
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	2 cut(s)	206, 489
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	3 cut(s)	173, 478, 547
Hpy188III	TCNNGA	3 cut(s)	6, 287, 307
Hpy8I	GTNNAC	1 cut(s)	581
Hpy99I	CGWCG	2 cut(s)	542, 646
HpyAV	CCTTC	2 cut(s)	3, 134
HpyCH4III	ACNGT	2 cut(s)	146, 520
HpyCH4IV	ACGT	3 cut(s)	76, 279, 412
HpyCH4V	TGCA	6 cut(s)	64, 207, 277, 371, 384, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 539
HpyF3I	CTNAG	3 cut(s)	298, 475, 676
HpySE526I	ACGT	3 cut(s)	76, 279, 412
Hsp92II	CATG	4 cut(s)	123, 265, 297, 342
HspAI	GCGC	1 cut(s)	265
KpnI	GGTACC	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	468, 651
LmnI	GCTCC	2 cut(s)	56, 116
Lsp1109I	GCAGC	2 cut(s)	704, 728
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	3 cut(s)	76, 279, 412
MaeIII	GTNAC	2 cut(s)	194, 569
MalI	GATC	2 cut(s)	470, 653
MboI	GATC	2 cut(s)	468, 651
MboII	GAAGA	4 cut(s)	335, 338, 428, 652
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	4 cut(s)	428, 602, 611, 704
MlyI	GAGTC	2 cut(s)	319, 368
MnlI	CCTC	6 cut(s)	96, 358, 444, 503, 673, 770
MseI	TTAA	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	3 cut(s)	153, 502, 576
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	3 cut(s)	153, 502, 576
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	19, 539
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	2 cut(s)	468, 651
NlaIII	CATG	4 cut(s)	123, 265, 297, 342
NlaIV	GGNNCC	3 cut(s)	285, 506, 653
NmuCI	GTSAC	1 cut(s)	194
NsbI	TGCGCA	1 cut(s)	266
NspI	RCATGY	3 cut(s)	123, 265, 297
NspV	TTCGAA	1 cut(s)	708
PaeI	GCATGC	2 cut(s)	123, 265
PaeR7I	CTCGAG	1 cut(s)	307
PctI	GAATGC	1 cut(s)	64
PinAI	ACCGGT	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	694, 718
PleI	GAGTC	2 cut(s)	318, 368
PmaCI	CACGTG	1 cut(s)	280
PmlI	CACGTG	1 cut(s)	280
PpsI	GAGTC	2 cut(s)	318, 368
Ppu21I	YACGTR	2 cut(s)	280, 413
PpuMI	RGGWCCY	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	151, 500, 574
PspCI	CACGTG	1 cut(s)	280
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	3 cut(s)	151, 500, 574
PspN4I	GGNNCC	3 cut(s)	285, 506, 653
PspPI	GGNCC	3 cut(s)	149, 284, 403
PspPPI	RGGWCCY	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	651
RsaI	GTAC	2 cut(s)	411, 506
RsaNI	GTAC	2 cut(s)	410, 505
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	693, 717
Sau3AI	GATC	2 cut(s)	468, 651
Sau96I	GGNCC	3 cut(s)	149, 284, 403
SchI	GAGTC	2 cut(s)	319, 368
ScrFI	CCNGG	3 cut(s)	153, 502, 576
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	708
SinI	GGWCC	2 cut(s)	149, 284
SlaI	CTCGAG	1 cut(s)	307
SmlI	CTYRAG	3 cut(s)	239, 307, 761
SmoI	CTYRAG	3 cut(s)	239, 307, 761
SphI	GCATGC	2 cut(s)	123, 265
Sse9I	AATT	4 cut(s)	428, 602, 611, 704
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	3 cut(s)	151, 500, 574
TaaI	ACNGT	2 cut(s)	146, 520
TaiI	ACGT	3 cut(s)	79, 282, 415
TaqI	TCGA	3 cut(s)	308, 608, 708
TasI	AATT	4 cut(s)	428, 602, 611, 704
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	151, 306
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	692, 716
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	336, 720
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	151, 306
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	149, 284
XapI	RAATTY	3 cut(s)	428, 611, 704
XceI	RCATGY	3 cut(s)	123, 265, 297
XhoI	CTCGAG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.