Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Reverse (-)

4426520 .. 4430710

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1063900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTCACGGAGGCCGGTGAATCTGAATTTGGACACGTCTCGACGGTTCGGGGACAACGGCGGAGCTCTGTTCTCAGGTTCTTCCTATTCCAAATCCAAGTCTTCTCCGATCTTATTGGTCGCCCTAGTTGCCGTGGGGGCATTGCTCCTTCTTGCGTATTCATACAGCGGCAGAGGTGGAGGTGGCAATCTTAAAGGTGTTGTTAGCAGGGTTGAAGGTGATTACTCATGCACGGTGGAGGTCCACCGAGCAATTCCCGTTTTGAAGAAAGCGTATGGTGACAGCATGCATAAGGTTTTGCACGTTGGCCCCGATACTTGTACTGTGGTTTCTAAATTGCTGAGTGAGGAAGAAACTGAAGCCTGGGGTGTGGAACCCTACGATGTAGAGGATGCTGGTAGAAGTTGTAAAGCTCTCGTGCGCAAAGACATTGTGCGTGTTGTTGATATCAAGTATCCACTTCCGTACAGGCCAAAGTCATTTTCTCTTGTACTTGTTTCGGATGCGTTGGATTATTTGTCTGAAAGATACCTCAACAGGACCCTCCCTGATTTGGCAAGGGTGTCGTCTGATGGTCTTGTGGTCTTTACAGGCTATCCTCGCAAGCAGAGAGCTAAAGCTGCTGAGGTCTCCAAATTTGGGAGGGCGGCCAAATTGAGGAGCACATCCTGGTGGTCTAAGTTTTTTGGTCAGGTTAGCTTAGAAGAGAATGATGATGCCGCCAAGAAATTCAATGAGGCAGCAACAAAGATGTCATATGTCTCAAACTGCCAAGTTTTCCACCTCAAGTCATTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

267

Amino Acids

29.26

Weight (kDa)

9.38

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	422
AciI	CCGC	4 cut(s)	60, 168, 647, 720
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	3 cut(s)	25, 635, 728
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	3 cut(s)	322, 467, 492
AfiI	CCNNNNNNNGG	3 cut(s)	553, 639, 657
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	215, 265, 733, 796
AjiI	CACGTC	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	362, 668
AjuI	GAANNNNNNNTTGG	4 cut(s)	11, 43, 466, 498
AluBI	AGCT	5 cut(s)	65, 413, 614, 620, 699
AluI	AGCT	5 cut(s)	65, 413, 614, 620, 699
Alw21I	GWGCWC	2 cut(s)	67, 665
Alw26I	GTCTC	3 cut(s)	42, 634, 766
AoxI	GGCC	4 cut(s)	11, 307, 470, 648
ApeKI	GCWGC	2 cut(s)	620, 740
ApoI	RAATTY	3 cut(s)	25, 635, 728
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	3 cut(s)	241, 308, 540
AsuHPI	GGTGA	3 cut(s)	28, 230, 290
AvaII	GGWCC	2 cut(s)	241, 540
BanII	GRGCYC	1 cut(s)	67
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	67, 665
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	2 cut(s)	607, 752
BccI	CCATC	1 cut(s)	566
BceAI	ACGGC	2 cut(s)	73, 116
BcgI	CGANNNNNNTGC	2 cut(s)	546, 580
BciT130I	CCWGG	2 cut(s)	364, 670
BciVI	GTATCC	1 cut(s)	465
BcoDI	GTCTC	3 cut(s)	42, 634, 766
BfaI	CTAG	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	465
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	5 cut(s)	169, 621, 648, 720, 741
BlsI	GCNGC	5 cut(s)	170, 622, 649, 721, 742
Bme1390I	CCNGG	2 cut(s)	364, 670
Bme18I	GGWCC	2 cut(s)	241, 540
BmgBI	CACGTC	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	241, 308, 540
BmiI	GGNNCC	3 cut(s)	310, 375, 542
BmrFI	CCNGG	2 cut(s)	364, 670
BmsI	GCATC	3 cut(s)	382, 493, 706
BpiI	GAAGAC	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	770
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	132, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	553, 639, 657
Bse118I	RCCGGY	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	364, 670
BseDI	CCNNGG	2 cut(s)	132, 363
BseGI	GGATG	3 cut(s)	397, 508, 665
BseLI	CCNNNNNNNGG	3 cut(s)	553, 639, 657
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	3 cut(s)	87, 332, 615
BseRI	GAGGAG	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	607, 752
BshFI	GGCC	4 cut(s)	13, 309, 472, 650
BsiHKAI	GWGCWC	2 cut(s)	67, 665
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	553, 639, 657
BsmAI	GTCTC	3 cut(s)	42, 634, 766
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	4 cut(s)	13, 309, 472, 650
Bso31I	GGTCTC	1 cut(s)	634
Bsp1286I	GDGCHC	2 cut(s)	67, 665
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	4 cut(s)	60, 168, 647, 720
BspANI	GGCC	4 cut(s)	13, 309, 472, 650
BspCNI	CTCAG	3 cut(s)	86, 333, 616
BspLI	GGNNCC	3 cut(s)	310, 375, 542
BspTNI	GGTCTC	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	132, 363
BssMI	GATC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	416
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	2 cut(s)	364, 670
Bst4CI	ACNGT	3 cut(s)	45, 235, 325
Bst6I	CTCTTC	1 cut(s)	699
BstC8I	GCNNGC	2 cut(s)	287, 605
BstDEI	CTNAG	5 cut(s)	73, 341, 624, 678, 700
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	397, 508, 665
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	3 cut(s)	42, 634, 766
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 137, 600, 620
BstNI	CCWGG	2 cut(s)	364, 670
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	362, 668
BstV1I	GCAGC	2 cut(s)	607, 752
BstV2I	GAAGAC	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	4 cut(s)	13, 309, 472, 650
BtgI	CCRYGG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	397, 508, 665
Cac8I	GCNNGC	2 cut(s)	287, 605
CfoI	GCGC	1 cut(s)	423
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	241, 308, 540
Csp6I	GTAC	3 cut(s)	321, 466, 491
CviAII	CATG	2 cut(s)	228, 286
CviQI	GTAC	3 cut(s)	321, 466, 491
DdeI	CTNAG	5 cut(s)	73, 341, 624, 678, 700
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	634
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	241, 540
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	362, 668
EcoRV	GATATC	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	2 cut(s)	231, 289
FaiI	YATR	7 cut(s)	163, 229, 276, 287, 291, 757, 759
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	227, 285
FauNDI	CATATG	1 cut(s)	757
Fnu4HI	GCNGC	5 cut(s)	169, 621, 648, 720, 741
FokI	GGATG	3 cut(s)	404, 515, 652
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	5 cut(s)	169, 621, 648, 720, 741
FspBI	CTAG	1 cut(s)	125
FspI	TGCGCA	1 cut(s)	422
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	5 cut(s)	169, 621, 648, 720, 741
HaeIII	GGCC	4 cut(s)	13, 309, 472, 650
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	231, 289
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	3 cut(s)	28, 230, 290
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	5 cut(s)	24, 108, 502, 523, 571
Hpy188III	TCNNGA	1 cut(s)	39
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	2 cut(s)	158, 209
HpyCH4III	ACNGT	3 cut(s)	45, 235, 325
HpyCH4IV	ACGT	2 cut(s)	35, 303
HpyCH4V	TGCA	3 cut(s)	231, 289, 301
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 137, 600, 620
HpyF3I	CTNAG	5 cut(s)	73, 341, 624, 678, 700
HpySE526I	ACGT	2 cut(s)	35, 303
Hsp92II	CATG	2 cut(s)	231, 289
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	62, 150, 660
Lsp1109I	GCAGC	2 cut(s)	607, 752
LweI	GCATC	3 cut(s)	382, 493, 706
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	35, 303
MaeIII	GTNAC	2 cut(s)	3, 278
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	5 cut(s)	72, 93, 277, 362, 716
MfeI	CAATTG	1 cut(s)	796
MhlI	GDGCHC	2 cut(s)	67, 665
MluCI	AATT	7 cut(s)	25, 252, 335, 635, 653, 728, 796
MmeI	TCCRAC	1 cut(s)	489
Mph1103I	ATGCAT	1 cut(s)	291
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	670
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	364, 670
MunI	CAATTG	1 cut(s)	796
MvaI	CCWGG	2 cut(s)	364, 670
MwoI	GCNNNNNNNGC	4 cut(s)	128, 137, 600, 620
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	231, 289
NlaIV	GGNNCC	3 cut(s)	310, 375, 542
NmuCI	GTSAC	2 cut(s)	3, 278
NsbI	TGCGCA	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	289
PaeI	GCATGC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	5 cut(s)	170, 622, 649, 721, 742
PpuMI	RGGWCCY	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	540
Psp6I	CCWGG	2 cut(s)	362, 668
PspGI	CCWGG	2 cut(s)	362, 668
PspN4I	GGNNCC	3 cut(s)	310, 375, 542
PspPI	GGNCC	3 cut(s)	241, 308, 540
PspPPI	RGGWCCY	1 cut(s)	540
RsaI	GTAC	3 cut(s)	322, 467, 492
RsaNI	GTAC	3 cut(s)	321, 466, 491
RseI	CAYNNNNRTG	1 cut(s)	670
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	5 cut(s)	169, 621, 648, 720, 741
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	3 cut(s)	241, 308, 540
ScrFI	CCNGG	2 cut(s)	364, 670
SduI	GDGCHC	2 cut(s)	67, 665
SfaNI	GCATC	3 cut(s)	382, 493, 706
SinI	GGWCC	2 cut(s)	241, 540
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	7 cut(s)	25, 252, 335, 635, 653, 728, 796
SsiI	CCGC	4 cut(s)	60, 168, 647, 720
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	362, 668
TaaI	ACNGT	3 cut(s)	45, 235, 325
TaiI	ACGT	2 cut(s)	38, 306
TaqI	TCGA	1 cut(s)	40
TasI	AATT	7 cut(s)	25, 252, 335, 635, 653, 728, 796
TatI	WGTACW	2 cut(s)	320, 490
TauI	GCSGC	3 cut(s)	171, 650, 722
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseFI	GTSAC	2 cut(s)	3, 278
TseI	GCWGC	2 cut(s)	620, 740
Tsp45I	GTSAC	2 cut(s)	3, 278
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	2 cut(s)	22, 453
VpaK11BI	GGWCC	2 cut(s)	241, 540
XapI	RAATTY	3 cut(s)	25, 635, 728
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	1 cut(s)	125
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.