Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Reverse (-)

22759260 .. 22762746

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1110700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCAAGGAGGCCAGTAAATCCTTCCAGACGCATTGGTGACGGTGGAAGTATCCCATTTGTGGGTGCAGTGCAATCCAAGGCACGCTCATCACCTCTACTGTCCATAGGACTTGTGCTTGTGGGTGCAGTTCTTCTCGTCTTCTACGCTTTTAGCGGGTCAGGTGGCCAGAGCACTAAAGAGGCTGTAATTAAACTTGAAGGTGGTTTTTCATGTACATTTGAAGTTCAAAGAGTAATACCTATACTAAAGAAAGCATATGGTGATAGCATGCGTAAGGTGTTGCACGTGGGCCCTGAAACCTGCTCAGTGGTATCTAAATTACTAAAAGAAGAGGATACTGAAGCATGGGGTGTGGAACCATATGACTTGGAAGATGCTGATGCAAGTTGCAAGAGTCTTGTTAGCAAAGGCATTGTGCGGGCGGCTGATATAAAGTTTCCACTGCCATACCGGGCAAAATCATTTTCTCTCGTAATAACATCGGATGCATTAGATTACTTGTCTCCAAAGTACCTCAACAGAACTCTTCCAGAGTTGGTGCGGGTATCTGCTGATGGTGTTGTTATCTTTACTGGTTATCCAGGTCAGCATAGAGCTAACGTTGCAGAGCTATCCAAATTTGGCCGTCCAGCGAAATTGCGAAGCTCATCTTGGTGGATAAGGTACTTTGTTCAAACAAGCCTAGAAGAGAACGAAGTGGCCTCAAAGAAGTTTGAACAGGCTGCACTAAAGAAATCTTACACACCTACCTGCCAAGTTTTCCACCTCAAGTCATACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

262

Amino Acids

28.68

Weight (kDa)

9.41

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	311, 761
AciI	CCGC	4 cut(s)	156, 421, 425, 544
AclI	AACGTT	1 cut(s)	603
AcoI	YGGCCR	2 cut(s)	166, 625
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	363
AcvI	CACGTG	1 cut(s)	289
AfaI	GTAC	3 cut(s)	217, 515, 668
AfiI	CCNNNNNNNGG	2 cut(s)	61, 62
AgsI	TTSAA	5 cut(s)	200, 224, 230, 677, 719
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	637, 669
AluBI	AGCT	3 cut(s)	599, 613, 648
AluI	AGCT	3 cut(s)	599, 613, 648
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	510
AoxI	GGCC	5 cut(s)	11, 166, 292, 625, 702
ApaI	GGGCCC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	1 cut(s)	620
AspS9I	GGNCC	2 cut(s)	292, 293
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	50, 84, 275
BaeGI	GKGCMC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	296
BbrPI	CACGTG	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	1 cut(s)	585
BciVI	GTATCC	2 cut(s)	62, 331
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	686
BfuAI	ACCTGC	2 cut(s)	311, 761
BfuI	GTATCC	2 cut(s)	62, 331
BisI	GCNGC	2 cut(s)	426, 726
BlsI	GCNGC	2 cut(s)	427, 727
Bme1390I	CCNGG	2 cut(s)	455, 585
BmgT120I	GGNCC	2 cut(s)	292, 293
BmiI	GGNNCC	2 cut(s)	294, 360
BmrFI	CCNGG	2 cut(s)	455, 585
BmsI	GCATC	3 cut(s)	367, 373, 478
BpiI	GAAGAC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 62
Bse1I	ACTGG	2 cut(s)	14, 580
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	2 cut(s)	61, 62
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	14, 580
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	712
BsgI	GTGCAG	3 cut(s)	87, 147, 711
BshFI	GGCC	5 cut(s)	13, 168, 294, 627, 704
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	61, 62
BsmAI	GTCTC	1 cut(s)	510
BsnI	GGCC	5 cut(s)	13, 168, 294, 627, 704
Bsp120I	GGGCCC	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	176, 296
Bsp1407I	TGTACA	1 cut(s)	215
BspACI	CCGC	4 cut(s)	156, 421, 425, 544
BspANI	GGCC	5 cut(s)	13, 168, 294, 627, 704
BspCNI	CTCAG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	294, 360
BspMI	ACCTGC	2 cut(s)	311, 761
BsrGI	TGTACA	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	14, 580
BssECI	CCNNGG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	2 cut(s)	44, 102
Bst6I	CTCTTC	3 cut(s)	327, 534, 684
BstAUI	TGTACA	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	3 cut(s)	85, 272, 423
BstDEI	CTNAG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	493
BstMAI	GTCTC	1 cut(s)	510
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	453, 583
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	712
BstV2I	GAAGAC	1 cut(s)	133
BsuI	GTATCC	2 cut(s)	62, 331
BsuRI	GGCC	5 cut(s)	13, 168, 294, 627, 704
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	2 cut(s)	75, 443
BtsIMutI	CAGTG	3 cut(s)	75, 315, 443
BveI	ACCTGC	2 cut(s)	311, 761
Cac8I	GCNNGC	3 cut(s)	85, 272, 423
Cfr13I	GGNCC	2 cut(s)	292, 293
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	216, 514, 667
CviAII	CATG	3 cut(s)	213, 271, 348
CviQI	GTAC	3 cut(s)	216, 514, 667
DdeI	CTNAG	1 cut(s)	307
EaeI	YGGCCR	2 cut(s)	166, 625
Eam1104I	CTCTTC	3 cut(s)	327, 534, 684
EarI	CTCTTC	3 cut(s)	327, 534, 684
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	363
Eco72I	CACGTG	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	216, 274, 351
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FatI	CATG	3 cut(s)	212, 270, 347
FauI	CCCGC	3 cut(s)	149, 414, 537
FauNDI	CATATG	2 cut(s)	259, 364
Fnu4HI	GCNGC	2 cut(s)	426, 726
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	426, 726
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	2 cut(s)	426, 726
HaeIII	GGCC	5 cut(s)	13, 168, 294, 627, 704
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	216, 274, 351
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	3 cut(s)	50, 84, 275
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	2 cut(s)	27, 533
HpyAV	CCTTC	2 cut(s)	33, 194
HpyCH4III	ACNGT	2 cut(s)	44, 102
HpyCH4IV	ACGT	2 cut(s)	288, 603
HpyCH4V	TGCA	9 cut(s)	68, 73, 128, 286, 386, 393, 491, 608, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	1 cut(s)	307
HpySE526I	ACGT	2 cut(s)	288, 603
Hsp92II	CATG	3 cut(s)	216, 274, 351
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	3 cut(s)	367, 373, 478
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	2 cut(s)	288, 603
MaeIII	GTNAC	1 cut(s)	38
MboII	GAAGA	6 cut(s)	125, 133, 344, 386, 521, 701
MhlI	GDGCHC	2 cut(s)	176, 296
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	4 cut(s)	189, 320, 620, 638
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	7 cut(s)	3, 105, 175, 328, 527, 715, 779
Mox20I	TGGCCA	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	655
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	2 cut(s)	455, 585
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	1 cut(s)	605
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	2 cut(s)	259, 364
NlaIII	CATG	3 cut(s)	216, 274, 351
NlaIV	GGNNCC	2 cut(s)	294, 360
NmuCI	GTSAC	1 cut(s)	38
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	427, 727
PleI	GAGTC	1 cut(s)	405
PmaCI	CACGTG	1 cut(s)	289
PmlI	CACGTG	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	405
Ppu21I	YACGTR	1 cut(s)	289
Psp1406I	AACGTT	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	583
PspCI	CACGTG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	294, 360
PspOMI	GGGCCC	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	292, 293
RsaI	GTAC	3 cut(s)	217, 515, 668
RsaNI	GTAC	3 cut(s)	216, 514, 667
RseI	CAYNNNNRTG	1 cut(s)	655
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	426, 726
Sau96I	GGNCC	2 cut(s)	292, 293
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	455, 585
SduI	GDGCHC	2 cut(s)	176, 296
SfaNI	GCATC	3 cut(s)	367, 373, 478
SmiMI	CAYNNNNRTG	1 cut(s)	655
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	4 cut(s)	189, 320, 620, 638
SsiI	CCGC	4 cut(s)	156, 421, 425, 544
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	2 cut(s)	453, 583
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	44, 102
TaiI	ACGT	2 cut(s)	291, 606
TasI	AATT	4 cut(s)	189, 320, 620, 638
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	75, 315, 450
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	201
TspRI	CASTG	3 cut(s)	75, 315, 450
XapI	RAATTY	1 cut(s)	620
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	1 cut(s)	686
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.