Rroxscaffold_7G00158770

At3g49720-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000825
Physical Location & Seq
Reverse (-)
2107094 .. 2108144
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158770.1

Sequence Viewer

Length: 375 bp
ATGAATTTGAATTTGGAAAACTTTTCACCTCTGTTTTCTCTGGCCGAGTTTCGTATTTTAAGAAGCTCAACAGATTATGATAGTTGGCGTTATCAAATTGCTTTAAGAAGTTCAAATGAACATCTCATCATCCGACTTTGGGAGATCTGTGTGATTTTCCATGTAGGCTCTCCTGGCAAGCAGAGAGCTAAAGCAGCTGAGGTCTCCAAATTTGGTAGGGCGGCTAAATTGAGGAACACAGCCTGGTGGACTAAGTTTTTTGGGCTGGTTAGCTTACAAGAGAACGAAGGTGCTGGCAAGAAGTTTAATATTGCTGCAACAAAGATGTCATTTGTCTCAAATTGTCAAGTTTTCCACCTCAGGTTATTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pentapeptide

Protein Analysis

124

Amino Acids

14.32

Weight (kDa)

10.01

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 3 cut(s) 4, 10, 209
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 3 cut(s) 10, 114, 370
AjnI CCWGG 2 cut(s) 172, 242
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 66, 188, 197, 273
AluI AGCT 4 cut(s) 66, 188, 197, 273
Alw26I GTCTC 2 cut(s) 208, 340
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 194, 314
ApoI RAATTY 3 cut(s) 4, 10, 209
AsuHPI GGTGA 1 cut(s) 18
AxyI CCTNAGG 1 cut(s) 359
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 206, 301
BciT130I CCWGG 2 cut(s) 174, 244
BcoDI GTCTC 2 cut(s) 208, 340
BglII AGATCT 1 cut(s) 144
BisI GCNGC 3 cut(s) 195, 222, 315
BlsI GCNGC 3 cut(s) 196, 223, 316
Bme1390I CCNGG 2 cut(s) 174, 244
BmrFI CCNGG 2 cut(s) 174, 244
Bpu10I CCTNAGC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse21I CCTNAGG 1 cut(s) 359
BseBI CCWGG 2 cut(s) 174, 244
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 189, 373
BseXI GCAGC 2 cut(s) 206, 301
BshFI GGCC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 208, 340
BsnI GGCC 1 cut(s) 44
Bso31I GGTCTC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 1 cut(s) 221
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 2 cut(s) 190, 372
BspTNI GGTCTC 1 cut(s) 208
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 174, 244
BstC8I GCNNGC 2 cut(s) 179, 295
BstDEI CTNAG 3 cut(s) 198, 252, 359
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 2 cut(s) 208, 340
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 174, 194
BstNI CCWGG 2 cut(s) 174, 244
BstSCI CCNGG 2 cut(s) 172, 242
BstV1I GCAGC 2 cut(s) 206, 301
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
Bsu36I CCTNAGG 1 cut(s) 359
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 179, 295
CviAII CATG 1 cut(s) 161
CviJI RGCY 9 cut(s) 44, 66, 168, 188, 197, 224, 242, 265, 273
CviKI_1 RGCY 9 cut(s) 44, 66, 168, 188, 197, 224, 242, 265, 273
DdeI CTNAG 3 cut(s) 198, 252, 359
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 172, 242
FaeI CATG 1 cut(s) 164
FaiI YATR 2 cut(s) 78, 162
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 195, 222, 315
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 195, 222, 315
GluI GCNGC 3 cut(s) 195, 222, 315
HaeIII GGCC 1 cut(s) 44
Hin1II CATG 1 cut(s) 164
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 194
HpyF3I CTNAG 3 cut(s) 198, 252, 359
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 144
LpnPI CCDG 8 cut(s) 26, 159, 186, 229, 251, 256, 279, 346
Lsp1109I GCAGC 2 cut(s) 206, 301
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MfeI CAATTG 1 cut(s) 370
MflI RGATCY 1 cut(s) 144
MluCI AATT 7 cut(s) 4, 10, 96, 209, 227, 340, 370
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 4 cut(s) 39, 193, 225, 368
MseI TTAA 3 cut(s) 59, 104, 306
MspA1I CMGCKG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 174, 244
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 2 cut(s) 174, 244
MwoI GCNNNNNNNGC 2 cut(s) 174, 194
NdeII GATC 1 cut(s) 144
NlaIII CATG 1 cut(s) 164
NmeAIII GCCGAG 1 cut(s) 70
PkrI GCNGC 3 cut(s) 196, 223, 316
Psp6I CCWGG 2 cut(s) 172, 242
PspGI CCWGG 2 cut(s) 172, 242
PsuI RGATCY 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 197
SaqAI TTAA 3 cut(s) 59, 104, 306
SatI GCNGC 3 cut(s) 195, 222, 315
Sau3AI GATC 1 cut(s) 144
ScrFI CCNGG 2 cut(s) 174, 244
SetI ASST 9 cut(s) 31, 68, 190, 199, 204, 275, 292, 360, 365
Sse9I AATT 7 cut(s) 4, 10, 96, 209, 227, 340, 370
SsiI CCGC 1 cut(s) 221
SspI AATATT 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 172, 242
TasI AATT 7 cut(s) 4, 10, 96, 209, 227, 340, 370
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 59, 104, 306
Tru9I TTAA 3 cut(s) 59, 104, 306
TseI GCWGC 2 cut(s) 194, 314
TspDTI ATGAA 2 cut(s) 17, 132
XapI RAATTY 3 cut(s) 4, 10, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.