Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Reverse (-)

36241494 .. 36244363

Gene Structure 2870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G417900.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCTCGGAGGCCAGTGAATGTGAATTTGAACCCGTCTCGGCGATTTGGGGACAATGGAGGCTCTTTACTCTCAGGCTCTGCCTATTCTAAGTCGAGGTCTTCTCCGATCTTATCAGTCGCACTTATCGCCGTGGGAGCATTGCTTCTTCTTGCCTATTCATACAACGGCGGCAGAGGTGGAGGTGGTGGCATTGTTAAAGGGGTTGTTAGCAGGGTTGAAGCTGCAGGTCACTCATGCACAGCGGAGGTCCAACGAGCAATTCCTGTTTTGAAGAAAGCATATGGTGACAGCATGCATAAGGTTTTGCACGTTGGCCCTGATACTTGTGCAGTGGTTTCTACATTGCTGAGTGAGGAAGAAACTGAAGCATGGGGTGTGGAACCTTATGATGTAGAGGATGCTGGTAGAAGCTGTAAAGCTCTTGTGCGCAAAGACGTAGTTCGTGTTGTTGATATCAAGTATCCGCTTCCATACAGGCCAAAGTCGTTTTCTATTGTACTTGTTTCGGATGCGTTGGATTATTTGTCGGATAAATACCTCAACAAGACCCTCCCGGATCTAGCAAGGGTATCAGTTGATGGTCTTGTGGTCTTTACTGGCTATCCTCGTAAGCAGAGAGCTAAAGCTGCTGAGGTCTCCAAATTTGGGAAGGCGGCTAAATTGAGGAGCACCTCCTGGTGGTCTAAGTATTTTGGTCAGATTAGTTTAGATGAGAACGAAGATGCCGCCAAGAAGTTTAAACTGGCCGCAACAAAGATGTCATATGTCTCAAACTGCCAAGTTTTTCACCTCAAGTCATTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

270

Amino Acids

29.19

Weight (kDa)

9.55

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	218
AciI	CCGC	6 cut(s)	171, 245, 467, 656, 729, 750
AclWI	GGATC	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	2 cut(s)	25, 644
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	648, 681
AgsI	TTSAA	4 cut(s)	31, 221, 274, 805
AjnI	CCWGG	1 cut(s)	677
AjuI	GAANNNNNNNTTGG	4 cut(s)	246, 278, 475, 507
AluBI	AGCT	5 cut(s)	224, 414, 422, 623, 629
AluI	AGCT	5 cut(s)	224, 414, 422, 623, 629
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	4 cut(s)	9, 42, 643, 775
AlwI	GGATC	1 cut(s)	567
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	4 cut(s)	11, 316, 479, 747
ApeKI	GCWGC	2 cut(s)	224, 629
ApoI	RAATTY	2 cut(s)	25, 644
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	250, 317
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	299, 782
AvaII	GGWCC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	674
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	211, 616
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	2 cut(s)	116, 184
BciT130I	CCWGG	1 cut(s)	679
BciVI	GTATCC	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	4 cut(s)	9, 42, 643, 775
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	474
BisI	GCNGC	6 cut(s)	172, 225, 630, 657, 729, 750
BlsI	GCNGC	6 cut(s)	173, 226, 631, 658, 730, 751
Bme1390I	CCNGG	2 cut(s)	557, 679
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	250, 317
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	557, 679
BmsI	GCATC	3 cut(s)	391, 502, 715
BpiI	GAAGAC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	779
BpuMI	CCSGG	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	643
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	648, 681
Bse1I	ACTGG	3 cut(s)	14, 604, 750
Bse3DI	GCAATG	2 cut(s)	140, 344
BseBI	CCWGG	1 cut(s)	679
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	406, 517
BseLI	CCNNNNNNNGG	2 cut(s)	648, 681
BseMI	GCAATG	2 cut(s)	140, 344
BseMII	CTCAG	3 cut(s)	87, 341, 624
BseNI	ACTGG	3 cut(s)	14, 604, 750
BseRI	GAGGAG	1 cut(s)	682
BseXI	GCAGC	2 cut(s)	211, 616
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	4 cut(s)	13, 318, 481, 749
BsiHKAI	GWGCWC	1 cut(s)	674
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	648, 681
BsmAI	GTCTC	4 cut(s)	9, 42, 643, 775
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	4 cut(s)	13, 318, 481, 749
Bso31I	GGTCTC	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	2 cut(s)	108, 559
BspACI	CCGC	6 cut(s)	171, 245, 467, 656, 729, 750
BspANI	GGCC	4 cut(s)	13, 318, 481, 749
BspCNI	CTCAG	3 cut(s)	86, 342, 625
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	567
BspTNI	GGTCTC	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	140, 344
BsrI	ACTGG	3 cut(s)	14, 604, 750
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	108, 559
Bst2UI	CCWGG	1 cut(s)	679
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	5 cut(s)	73, 90, 350, 633, 687
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	406, 517
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	2 cut(s)	111, 562
BstMAI	GTCTC	4 cut(s)	9, 42, 643, 775
BstMBI	GATC	2 cut(s)	108, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 137, 629
BstNI	CCWGG	1 cut(s)	679
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	555, 677
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	211, 616
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	474
BsuRI	GGCC	4 cut(s)	13, 318, 481, 749
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	406, 517
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	21, 339
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	296
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	250, 317
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	3 cut(s)	237, 295, 372
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	5 cut(s)	73, 90, 350, 633, 687
DpnI	GATC	2 cut(s)	110, 561
DpnII	GATC	2 cut(s)	108, 559
DraI	TTTAAA	1 cut(s)	742
EaeI	YGGCCR	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	643
Eco32I	GATATC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	677
EcoRV	GATATC	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	3 cut(s)	240, 298, 375
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	236, 294, 371
FauNDI	CATATG	2 cut(s)	283, 766
Fnu4HI	GCNGC	6 cut(s)	172, 225, 630, 657, 729, 750
FokI	GGATG	2 cut(s)	413, 524
Fsp4HI	GCNGC	6 cut(s)	172, 225, 630, 657, 729, 750
FspBI	CTAG	1 cut(s)	563
FspI	TGCGCA	1 cut(s)	431
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	6 cut(s)	172, 225, 630, 657, 729, 750
HaeIII	GGCC	4 cut(s)	13, 318, 481, 749
HapII	CCGG	1 cut(s)	557
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	240, 298, 375
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	2 cut(s)	299, 782
Hpy188I	TCNGA	5 cut(s)	9, 108, 511, 532, 702
HpyAV	CCTTC	1 cut(s)	646
HpyCH4IV	ACGT	2 cut(s)	312, 438
HpyCH4V	TGCA	5 cut(s)	227, 240, 298, 310, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 137, 629
HpyF3I	CTNAG	5 cut(s)	73, 90, 350, 633, 687
HpySE526I	ACGT	2 cut(s)	312, 438
Hsp92II	CATG	3 cut(s)	240, 298, 375
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	108, 559
LmnI	GCTCC	2 cut(s)	137, 669
Lsp1109I	GCAGC	2 cut(s)	211, 616
LweI	GCATC	3 cut(s)	391, 502, 715
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	2 cut(s)	312, 438
MaeIII	GTNAC	2 cut(s)	230, 287
MalI	GATC	2 cut(s)	110, 561
MboI	GATC	2 cut(s)	108, 559
MboII	GAAGA	5 cut(s)	93, 140, 286, 371, 734
MfeI	CAATTG	1 cut(s)	805
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	5 cut(s)	25, 261, 644, 662, 805
MmeI	TCCRAC	3 cut(s)	277, 498, 510
Mph1103I	ATGCAT	1 cut(s)	300
MseI	TTAA	2 cut(s)	198, 741
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	2 cut(s)	557, 679
MssI	GTTTAAAC	1 cut(s)	742
MunI	CAATTG	1 cut(s)	805
MvaI	CCWGG	1 cut(s)	679
MwoI	GCNNNNNNNGC	3 cut(s)	128, 137, 629
NciI	CCSGG	1 cut(s)	557
NdeI	CATATG	2 cut(s)	283, 766
NdeII	GATC	2 cut(s)	108, 559
NlaIII	CATG	3 cut(s)	240, 298, 375
NlaIV	GGNNCC	1 cut(s)	384
NmeAIII	GCCGAG	1 cut(s)	19
NmuCI	GTSAC	2 cut(s)	230, 287
NsbI	TGCGCA	1 cut(s)	431
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	6 cut(s)	173, 226, 631, 658, 730, 751
PmeI	GTTTAAAC	1 cut(s)	742
Psp6I	CCWGG	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	677
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	250, 317
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	198, 741
SatI	GCNGC	6 cut(s)	172, 225, 630, 657, 729, 750
Sau3AI	GATC	2 cut(s)	108, 559
Sau96I	GGNCC	2 cut(s)	250, 317
ScrFI	CCNGG	2 cut(s)	557, 679
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	3 cut(s)	391, 502, 715
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	5 cut(s)	25, 261, 644, 662, 805
SsiI	CCGC	6 cut(s)	171, 245, 467, 656, 729, 750
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	555, 677
TaiI	ACGT	2 cut(s)	315, 441
TaqI	TCGA	1 cut(s)	95
TasI	AATT	5 cut(s)	25, 261, 644, 662, 805
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	4 cut(s)	174, 659, 731, 752
Tru1I	TTAA	2 cut(s)	198, 741
Tru9I	TTAA	2 cut(s)	198, 741
TscAI	CASTG	2 cut(s)	21, 339
TseFI	GTSAC	2 cut(s)	230, 287
TseI	GCWGC	2 cut(s)	224, 629
Tsp45I	GTSAC	2 cut(s)	230, 287
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	21, 339
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	2 cut(s)	25, 644
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	1 cut(s)	563
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.