RLG00000017695

At3g49720-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
20128465 .. 20129187
723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017695

Sequence Viewer

Length: 318 bp
ATGCGAACCGTTCTCGGCGATTGGGTGATAACGGAGGCAGTTGGCTCTCAGGCTCGTGCTATTCTAAATCAAGGTCTTCTCCAATCTTATATGTTGCTCTTATTGTCGTGGGAGCATTGCTTATTCTTGCCTATTCACACAGTTGCAAAGGTGGACTTGGTAATATTAGAAGGGCTACTAGCAGGGTTCAAGGCAAGTGATTACTCATGCACAACGGAGGTCCAGCAAGCAATTCATGTTTTGAAGAAAGCATATGGTGACAGCATGCATAAGGTTTTACATGTTGGCCCTAATACTTATACTGTGCATTTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.75

Weight (kDa)

6.57

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 2 cut(s) 190, 244
AoxI GGCC 1 cut(s) 286
AspS9I GGNCC 2 cut(s) 220, 287
AsuHPI GGTGA 2 cut(s) 37, 269
AvaII GGWCC 1 cut(s) 220
BauI CACGAG 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 68
BfaI CTAG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 220, 287
BpiI GAAGAC 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 62
BshFI GGCC 1 cut(s) 288
BsnI GGCC 1 cut(s) 288
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 115
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
Bst4CI ACNGT 3 cut(s) 10, 142, 304
BstC8I GCNNGC 2 cut(s) 228, 266
BstDEI CTNAG 1 cut(s) 48
BstNSI RCATGY 2 cut(s) 268, 284
BstV2I GAAGAC 1 cut(s) 68
BsuRI GGCC 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 228, 266
Cfr13I GGNCC 2 cut(s) 220, 287
CviAII CATG 4 cut(s) 207, 236, 265, 281
CviJI RGCY 4 cut(s) 45, 53, 175, 288
CviKI_1 RGCY 4 cut(s) 45, 53, 175, 288
DdeI CTNAG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 270
FaeI CATG 4 cut(s) 210, 239, 268, 284
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 4 cut(s) 206, 235, 264, 280
FauNDI CATATG 1 cut(s) 253
FspBI CTAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 288
Hin1II CATG 4 cut(s) 210, 239, 268, 284
HphI GGTGA 2 cut(s) 37, 269
Hpy166II GTNNAC 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 3 cut(s) 10, 142, 304
HpyCH4V TGCA 4 cut(s) 146, 210, 268, 307
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 4 cut(s) 210, 239, 268, 284
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 3 cut(s) 35, 168, 236
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 257
MboII GAAGA 2 cut(s) 68, 256
MluCI AATT 1 cut(s) 231
MnlI CCTC 2 cut(s) 28, 211
Mph1103I ATGCAT 1 cut(s) 270
NdeI CATATG 1 cut(s) 253
NlaIII CATG 4 cut(s) 210, 239, 268, 284
NmuCI GTSAC 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 2 cut(s) 268, 284
PaeI GCATGC 1 cut(s) 268
PciI ACATGT 1 cut(s) 280
PscI ACATGT 1 cut(s) 280
PspPI GGNCC 2 cut(s) 220, 287
Sau96I GGNCC 2 cut(s) 220, 287
SetI ASST 4 cut(s) 76, 153, 222, 276
SinI GGWCC 1 cut(s) 220
SphI GCATGC 1 cut(s) 268
Sse9I AATT 1 cut(s) 231
SspI AATATT 1 cut(s) 165
SspMI CTAG 1 cut(s) 179
TaaI ACNGT 3 cut(s) 10, 142, 304
TasI AATT 1 cut(s) 231
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 2 cut(s) 47, 230
VpaK11BI GGWCC 1 cut(s) 220
XceI RCATGY 2 cut(s) 268, 284
XspI CTAG 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.