Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Forward (+)

18639672 .. 18641256

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGTCATTTCTTCCCATCTATAGACGTTAAAAGTATCTACGGTCTCTCGGAGCCCTTGCTTGCTTTGCAAGTCACCGAGTTGAAGGATGGTGTCTTCATCAGTTTTGGTTACAATCACATGGTTGCCGATGGAGCTTCGATTTGGAATTTCTTCAATACTTGGTCCAAGATTTGCTCAAATGAATACGATCATCAGAAGAATCTCAAGCCTCTTGTTCTCAGAGGATGGTTCCTCGACAAGATCGATTACCGGATCCATATTCCGGCTTCTGAGGCGGATGCCCCGACAAGTGATGAGATTTCTCAGATGCCCACTTCGAAAGAGAGAGTTTTTCACTTCACAAAGAAGAATATTTCAGAGCTCAAAACTAAAGCCAACGGTGAAACCGGCTCAAGTGACCTAATCATCTCGTCTTTACAAGCGCTTTCCGCACATTTATGGAGGTCAATTATCAGACACAGTGGTATGAAACGAGAAGAAGAAACGCATTGCAAAGTGGCTGTGGATTTGAGGCAGAGGCTAAACCCTCCGCTTGACAAAGAGTGTTTTGGGAACGTGAACAATCTCGGGGTAGCTACTGTCACGGTTGGGGAACTTTTGGATCATGAGATTGGTTGGGCTGCTTTGCAAATAAGTAAAATGGTGAGGTCTCAAACTGATGAGAAGTATAAAACTTTTGCTGAGAATTGGGTTAACAATGTAAAGATCTCAAAAACAGGTGATGGAAGTAGAATGGTTTGTGATTCTGTGGTTGTCTCAAGCTCTCCTTGGTTTGATGTGTATGGGAATGATTTTGGTTGGGGAACCGATTGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

273

Amino Acids

30.74

Weight (kDa)

5.99

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	15 - 270	3.7e-47	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	278, 432, 533
AclWI	GGATC	3 cut(s)	250, 263, 612
AcsI	RAATTY	1 cut(s)	148
AfeI	AGCGCT	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	85, 157
AluBI	AGCT	5 cut(s)	137, 364, 578, 765, 819
AluI	AGCT	5 cut(s)	137, 364, 578, 765, 819
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	3 cut(s)	50, 657, 763
AlwI	GGATC	3 cut(s)	250, 263, 612
Ama87I	CYCGRG	1 cut(s)	569
Aor51HI	AGCGCT	1 cut(s)	426
ApeKI	GCWGC	2 cut(s)	623, 816
ApoI	RAATTY	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	4 cut(s)	67, 395, 658, 734
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	57, 366
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	5 cut(s)	25, 83, 125, 222, 719
BcoDI	GTCTC	3 cut(s)	50, 657, 763
BfaI	CTAG	1 cut(s)	820
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	428
BglII	AGATCT	1 cut(s)	708
BisI	GCNGC	2 cut(s)	624, 817
BlsI	GCNGC	2 cut(s)	625, 818
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	4 cut(s)	54, 233, 257, 808
BmsI	GCATC	2 cut(s)	271, 300
BpiI	GAAGAC	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	3 cut(s)	191, 379, 745
Bsa29I	ATCGAT	1 cut(s)	246
BsaI	GGTCTC	2 cut(s)	50, 657
BsaJI	CCNNGG	1 cut(s)	770
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	490
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	770
BseGI	GGATG	3 cut(s)	94, 233, 286
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	4 cut(s)	235, 264, 320, 675
BseXI	GCAGC	1 cut(s)	610
BshVI	ATCGAT	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	3 cut(s)	253, 266, 390
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	3 cut(s)	50, 657, 763
Bso31I	GGTCTC	2 cut(s)	50, 657
BsoBI	CYCGRG	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	57, 366
Bsp143I	GATC	5 cut(s)	190, 243, 255, 604, 708
BspACI	CCGC	3 cut(s)	278, 432, 533
BspCNI	CTCAG	4 cut(s)	234, 265, 319, 676
BspDI	ATCGAT	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	4 cut(s)	54, 233, 257, 808
BspPI	GGATC	3 cut(s)	250, 263, 612
BspT104I	TTCGAA	1 cut(s)	320
BspTNI	GGTCTC	2 cut(s)	50, 657
BsrDI	GCAATG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	389
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	770
BssMI	GATC	5 cut(s)	190, 243, 255, 604, 708
BssT1I	CCWWGG	1 cut(s)	770
Bst4CI	ACNGT	5 cut(s)	44, 383, 464, 583, 589
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	4 cut(s)	221, 273, 306, 684
BstF5I	GGATG	3 cut(s)	94, 233, 286
BstH2I	RGCGCY	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	5 cut(s)	193, 246, 258, 607, 711
BstMAI	GTCTC	3 cut(s)	50, 657, 763
BstMBI	GATC	5 cut(s)	190, 243, 255, 604, 708
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 134, 275, 431
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	2 cut(s)	255, 708
BstYI	RGATCY	2 cut(s)	255, 708
Bsu15I	ATCGAT	1 cut(s)	246
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	94, 233, 286
BtsIMutI	CAGTG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	63
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	165
ClaI	ATCGAT	1 cut(s)	246
CviAII	CATG	2 cut(s)	121, 608
DdeI	CTNAG	4 cut(s)	221, 273, 306, 684
DpnI	GATC	5 cut(s)	192, 245, 257, 606, 710
DpnII	GATC	5 cut(s)	190, 243, 255, 604, 708
EciI	GGCGGA	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	770
Eco24I	GRGCYC	2 cut(s)	57, 366
Eco31I	GGTCTC	2 cut(s)	50, 657
Eco47I	GGWCC	1 cut(s)	165
Eco47III	AGCGCT	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	770
EcoT38I	GRGCYC	2 cut(s)	57, 366
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	2 cut(s)	124, 611
FaiI	YATR	8 cut(s)	23, 122, 261, 442, 470, 609, 672, 786
FalI	AAGNNNNNCTT	2 cut(s)	754, 786
FatI	CATG	2 cut(s)	120, 607
Fnu4HI	GCNGC	2 cut(s)	624, 817
FokI	GGATG	3 cut(s)	101, 240, 293
FriOI	GRGCYC	2 cut(s)	57, 366
Fsp4HI	GCNGC	2 cut(s)	624, 817
FspBI	CTAG	1 cut(s)	820
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	2 cut(s)	624, 817
HaeII	RGCGCY	1 cut(s)	428
HapII	CCGG	3 cut(s)	253, 266, 390
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	2 cut(s)	124, 611
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	3 cut(s)	4, 202, 746
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	3 cut(s)	253, 266, 390
HphI	GGTGA	4 cut(s)	67, 395, 658, 734
Hpy166II	GTNNAC	2 cut(s)	562, 697
Hpy188I	TCNGA	7 cut(s)	52, 198, 224, 274, 309, 361, 458
Hpy188III	TCNNGA	1 cut(s)	608
Hpy8I	GTNNAC	2 cut(s)	562, 697
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	5 cut(s)	44, 383, 464, 583, 589
HpyCH4IV	ACGT	2 cut(s)	27, 558
HpyCH4V	TGCA	4 cut(s)	70, 495, 631, 816
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 134, 275, 431
HpyF3I	CTNAG	4 cut(s)	221, 273, 306, 684
HpySE526I	ACGT	2 cut(s)	27, 558
Hsp92II	CATG	2 cut(s)	124, 611
HspAI	GCGC	1 cut(s)	425
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	190, 243, 255, 604, 708
LmnI	GCTCC	2 cut(s)	52, 134
LpnPI	CCDG	4 cut(s)	266, 279, 403, 705
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	2 cut(s)	271, 300
MaeI	CTAG	1 cut(s)	820
MaeII	ACGT	2 cut(s)	27, 558
MaeIII	GTNAC	4 cut(s)	73, 110, 398, 583
MalI	GATC	5 cut(s)	192, 245, 257, 606, 710
MboI	GATC	5 cut(s)	190, 243, 255, 604, 708
MboII	GAAGA	7 cut(s)	4, 88, 145, 211, 361, 491, 494
MflI	RGATCY	2 cut(s)	255, 708
MhlI	GDGCHC	2 cut(s)	57, 366
MluCI	AATT	3 cut(s)	148, 450, 688
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	9 cut(s)	218, 222, 245, 268, 438, 507, 513, 540, 642
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	2 cut(s)	30, 696
MslI	CAYNNNNRTG	1 cut(s)	439
MspI	CCGG	3 cut(s)	253, 266, 390
MwoI	GCNNNNNNNGC	4 cut(s)	67, 134, 275, 431
NdeII	GATC	5 cut(s)	190, 243, 255, 604, 708
NlaIII	CATG	2 cut(s)	124, 611
NlaIV	GGNNCC	4 cut(s)	54, 233, 257, 808
NmuCI	GTSAC	3 cut(s)	73, 398, 583
NspV	TTCGAA	1 cut(s)	320
PagI	TCATGA	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	202, 746
PkrI	GCNGC	2 cut(s)	625, 818
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	366
PspN4I	GGNNCC	4 cut(s)	54, 233, 257, 808
PspPI	GGNCC	1 cut(s)	165
PsuI	RGATCY	2 cut(s)	255, 708
RseI	CAYNNNNRTG	1 cut(s)	439
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	30, 696
SatI	GCNGC	2 cut(s)	624, 817
Sau3AI	GATC	5 cut(s)	190, 243, 255, 604, 708
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	57, 366
SfaNI	GCATC	2 cut(s)	271, 300
SfcI	CTRYAG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	439
SmlI	CTYRAG	3 cut(s)	206, 394, 760
SmoI	CTYRAG	3 cut(s)	206, 394, 760
Sse9I	AATT	3 cut(s)	148, 450, 688
SsiI	CCGC	3 cut(s)	278, 432, 533
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	820
SstI	GAGCTC	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	5 cut(s)	44, 383, 464, 583, 589
TaiI	ACGT	2 cut(s)	30, 561
TaqI	TCGA	4 cut(s)	140, 237, 246, 320
TasI	AATT	3 cut(s)	148, 450, 688
TfiI	GAWTC	2 cut(s)	202, 746
Tru1I	TTAA	2 cut(s)	30, 696
Tru9I	TTAA	2 cut(s)	30, 696
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	3 cut(s)	73, 398, 583
TseI	GCWGC	2 cut(s)	623, 816
Tsp45I	GTSAC	3 cut(s)	73, 398, 583
TspDTI	ATGAA	3 cut(s)	88, 198, 485
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.