RLG00000017475

acetyltransferase At3g50280-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
17313492 .. 17314049
558 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017475

Sequence Viewer

Length: 558 bp
ATGGCTCATCTTTGGCGAGCCACCACACGTAGCACTAAGCATGATTTGACTACCGATCAAGAGATCACTTACAGAGTTGTAGTAGGACTGAGGCAGAGAATGGATCCACCACTACCGGAACAATACTCTGGGAATGCGCTTCTTGGAATCCCTGTGAAGTCCACTGCAGCGGATCTGCTACACCGCGGACTAGGCTGGGCGGCATTGCAGCTAAACAAGGCTATTGTTTCCATTACTGCTGAAGAAACCAAGAAGTACCTGGAAGACTGGGTAAAAAGTCCTACATTTCTCTCGAATGCGAGGGGTGATTCAGCTGCAATCTGGTCTAGTACTAGTTTGCTGACGGGAAGCTCACCGCGGTTCAATGTGTATGGGAATGATTTCGGGTGGGGGAGACCGCTGGCTGTGCGAAGCGGAGCTGCGGACAAGAGGAGTGGGAAGTTAACGGTGTTTCCTGGCGCCGAAGAAGGAAGTGTTGACTTTGAAGTTTGCCTTTTGCCGGAGATTCTACAAGCTATGGGGGATGATGCAGAGTTCATGGAAGCCGTGCTCACATGA

Protein Analysis

186

Amino Acids

20.21

Weight (kDa)

5.63

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 180 1.4e-31 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 458
AccII CGCG 2 cut(s) 186, 358
AciI CCGC 9 cut(s) 170, 184, 186, 200, 356, 358, 398, 414, 422
AclWI GGATC 3 cut(s) 98, 111, 180
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 2 cut(s) 257, 331
AfiI CCNNNNNNNGG 1 cut(s) 499
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 2 cut(s) 364, 485
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 2 cut(s) 258, 454
AluBI AGCT 5 cut(s) 211, 314, 351, 419, 515
AluI AGCT 5 cut(s) 211, 314, 351, 419, 515
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 388
AlwI GGATC 3 cut(s) 98, 111, 180
ApeKI GCWGC 4 cut(s) 167, 208, 314, 419
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 139, 461
AsuHPI GGTGA 2 cut(s) 317, 345
BamHI GGATCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 179, 220, 301, 406
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 2 cut(s) 260, 456
BcoDI GTCTC 1 cut(s) 388
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 3 cut(s) 191, 327, 333
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 5 cut(s) 168, 201, 209, 315, 420
BlsI GCNGC 5 cut(s) 169, 202, 210, 316, 421
BmcAI AGTACT 1 cut(s) 331
Bme1390I CCNGG 2 cut(s) 260, 456
BmiI GGNNCC 2 cut(s) 105, 460
BmrFI CCNGG 2 cut(s) 260, 456
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 517
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 184, 356
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 203
BseBI CCWGG 2 cut(s) 260, 456
BseDI CCNNGG 2 cut(s) 184, 356
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 445
BseXI GCAGC 4 cut(s) 179, 220, 301, 406
BseYI CCCAGC 1 cut(s) 195
Bsh1236I CGCG 2 cut(s) 186, 358
BshNI GGYRCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 2 cut(s) 116, 500
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 1 cut(s) 388
BsmI GAATGC 2 cut(s) 139, 301
Bso31I GGTCTC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 4 cut(s) 55, 63, 103, 172
BspACI CCGC 9 cut(s) 170, 184, 186, 200, 356, 358, 398, 414, 422
BspCNI CTCAG 1 cut(s) 81
BspFNI CGCG 2 cut(s) 186, 358
BspLI GGNNCC 2 cut(s) 105, 460
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 3 cut(s) 98, 111, 180
BspT107I GGYRCC 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 388
BsrDI GCAATG 1 cut(s) 203
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 184, 356
BssMI GATC 4 cut(s) 55, 63, 103, 172
BssNI GRCGYC 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 260, 456
Bst4CI ACNGT 1 cut(s) 448
BstACI GRCGYC 1 cut(s) 459
BstBAI YACGTR 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 18, 402
BstDEI CTNAG 2 cut(s) 36, 89
BstDSI CCRYGG 2 cut(s) 184, 356
BstF5I GGATG 1 cut(s) 529
BstFNI CGCG 2 cut(s) 186, 358
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 2 cut(s) 139, 461
BstKTI GATC 4 cut(s) 58, 66, 106, 175
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 4 cut(s) 55, 63, 103, 172
BstMWI GCNNNNNNNGC 2 cut(s) 192, 406
BstNI CCWGG 2 cut(s) 260, 456
BstSCI CCNGG 2 cut(s) 258, 454
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 2 cut(s) 186, 358
BstV1I GCAGC 4 cut(s) 179, 220, 301, 406
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 2 cut(s) 103, 172
BstYI RGATCY 2 cut(s) 103, 172
BtgI CCRYGG 2 cut(s) 184, 356
BtsCI GGATG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 18, 402
CfoI GCGC 2 cut(s) 139, 461
Cfr42I CCGCGG 2 cut(s) 187, 359
Csp6I GTAC 2 cut(s) 256, 330
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 3 cut(s) 41, 538, 555
CviQI GTAC 2 cut(s) 256, 330
DdeI CTNAG 2 cut(s) 36, 89
DinI GGCGCC 1 cut(s) 460
DpnI GATC 4 cut(s) 57, 65, 105, 174
DpnII GATC 4 cut(s) 55, 63, 103, 172
Eco31I GGTCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 258, 454
EgeI GGCGCC 1 cut(s) 460
EheI GGCGCC 1 cut(s) 460
FaeI CATG 3 cut(s) 44, 541, 558
FaiI YATR 5 cut(s) 42, 372, 518, 539, 556
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FatI CATG 3 cut(s) 40, 537, 554
Fnu4HI GCNGC 5 cut(s) 168, 201, 209, 315, 420
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 5 cut(s) 168, 201, 209, 315, 420
FspBI CTAG 3 cut(s) 191, 327, 333
GlaI GCGC 2 cut(s) 138, 460
GluI GCNGC 5 cut(s) 168, 201, 209, 315, 420
GsaI CCCAGC 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 462
HapII CCGG 2 cut(s) 116, 500
HhaI GCGC 2 cut(s) 139, 461
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 3 cut(s) 44, 541, 558
Hin6I GCGC 2 cut(s) 137, 459
HinP1I GCGC 2 cut(s) 137, 459
HincII GTYRAC 2 cut(s) 444, 478
HindII GTYRAC 2 cut(s) 444, 478
HinfI GANTC 3 cut(s) 147, 308, 505
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 2 cut(s) 116, 500
HphI GGTGA 2 cut(s) 317, 345
Hpy166II GTNNAC 3 cut(s) 162, 444, 478
Hpy188III TCNNGA 2 cut(s) 59, 292
Hpy8I GTNNAC 3 cut(s) 162, 444, 478
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 4 cut(s) 167, 208, 317, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 406
HpyF3I CTNAG 2 cut(s) 36, 89
HpySE526I ACGT 1 cut(s) 28
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 3 cut(s) 44, 541, 558
HspAI GCGC 2 cut(s) 137, 459
KasI GGCGCC 1 cut(s) 458
KspAI GTTAAC 1 cut(s) 444
KspI CCGCGG 2 cut(s) 187, 359
Kzo9I GATC 4 cut(s) 55, 63, 103, 172
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 4 cut(s) 179, 220, 301, 406
LweI GCATC 1 cut(s) 517
MaeI CTAG 3 cut(s) 191, 327, 333
MaeII ACGT 1 cut(s) 28
MalI GATC 4 cut(s) 57, 65, 105, 174
MboI GATC 4 cut(s) 55, 63, 103, 172
MboII GAAGA 3 cut(s) 254, 275, 476
MflI RGATCY 2 cut(s) 103, 172
MhlI GDGCHC 1 cut(s) 552
Mly113I GGCGCC 1 cut(s) 459
MnlI CCTC 3 cut(s) 84, 294, 423
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 1 cut(s) 443
MspA1I CMGCKG 5 cut(s) 170, 186, 314, 358, 400
MspI CCGG 2 cut(s) 116, 500
MspR9I CCNGG 2 cut(s) 260, 456
Mva1269I GAATGC 2 cut(s) 139, 301
MvaI CCWGG 2 cut(s) 260, 456
MvnI CGCG 2 cut(s) 186, 358
MwoI GCNNNNNNNGC 2 cut(s) 192, 406
NarI GGCGCC 1 cut(s) 459
NdeII GATC 4 cut(s) 55, 63, 103, 172
NlaIII CATG 3 cut(s) 44, 541, 558
NlaIV GGNNCC 2 cut(s) 105, 460
PctI GAATGC 2 cut(s) 139, 301
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 147, 308, 505
PkrI GCNGC 5 cut(s) 169, 202, 210, 316, 421
PluTI GGCGCC 1 cut(s) 462
Ppu21I YACGTR 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 258, 454
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 2 cut(s) 258, 454
PspN4I GGNNCC 2 cut(s) 105, 460
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 2 cut(s) 103, 172
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 2 cut(s) 257, 331
RsaNI GTAC 2 cut(s) 256, 330
SacII CCGCGG 2 cut(s) 187, 359
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 5 cut(s) 168, 201, 209, 315, 420
Sau3AI GATC 4 cut(s) 55, 63, 103, 172
ScaI AGTACT 1 cut(s) 331
ScrFI CCNGG 2 cut(s) 260, 456
SduI GDGCHC 1 cut(s) 552
SetI ASST 7 cut(s) 31, 213, 261, 316, 353, 421, 517
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 165
SfoI GGCGCC 1 cut(s) 460
Sfr303I CCGCGG 2 cut(s) 187, 359
SgrBI CCGCGG 2 cut(s) 187, 359
SpeI ACTAGT 1 cut(s) 332
SsiI CCGC 9 cut(s) 170, 184, 186, 200, 356, 358, 398, 414, 422
SspDI GGCGCC 1 cut(s) 458
SspMI CTAG 3 cut(s) 191, 327, 333
StyD4I CCNGG 2 cut(s) 258, 454
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 293
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 3 cut(s) 147, 308, 505
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 1 cut(s) 169
TseI GCWGC 4 cut(s) 167, 208, 314, 419
TspDTI ATGAA 1 cut(s) 526
TspRI CASTG 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 3 cut(s) 191, 327, 333
ZrmI AGTACT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.