Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17334522 .. 17335476

Gene Structure 955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAACACCTAAAAGTTTCCCTTTCTTGCACTTTGAATATCTTGTACCCACTAGCAGGTCGCTTATCCCAGATTGAAAACGAAGATGGCACCACTTGCTTTTTCATCAACTGTAACAGCGCAGGAGCCCAATTTGTTCATGTAGCTCATGATGGTGTCAGAGTGGCTGATATTCTTGACCCTGTTTACATTCCTGGTGAGATTATCGAAAACCTATTTTCTATGAATTCAGTTCCGAACTATGAAGGCATTTCAAAACCATTGCTTGCAGTGCAAATCACTGAGCTTGCGGATGGCATATTTATTGGTTGCAGCATAAACCATGTGGTTGCAGATGGCACCTCTTTCTGGCATTTCTTTCGCATACCGTTCTCCCAAATTCAAATCCCGGAGACACTTATTCAACAGACACCTTCTTCAACTCTTTTACAAAGGGTGTTTTATTTTCCCAAAGAAAAAGTTGTGCGGCTCAAAGCAAAGGCTAATGCTGAGAATCCTGAGATGGGTACAAATAACATCTCGTCCTTTCAGGCACTCATGGCTCATCTTTGGAGAGCCACAACACGTGGAAGACGTGATGTCAAATCCAATGAAGAGACTACTTACCGGATTGCAATAGGGTTGAGGCAAAAATTGAAGCCACCATTGCCAAATCTTTACATGGGGAATGCACTTCGAGGAGTTTCTACCAACTCCACTGCAAGTGATATATCTGCTACAACATGGACTAGGATGGGCCACTTGAAAATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

252

Amino Acids

27.96

Weight (kDa)

8.9

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	2 - 120	7.7e-27	Transferase family
Transferase	PF02458	128 - 241	1.1e-16	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	2 cut(s)	89, 338
AciI	CCGC	2 cut(s)	290, 466
AcsI	RAATTY	2 cut(s)	226, 378
AcvI	CACGTG	1 cut(s)	566
AfaI	GTAC	2 cut(s)	47, 508
AfiI	CCNNNNNNNGG	3 cut(s)	56, 348, 503
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	8 cut(s)	37, 77, 255, 383, 404, 420, 637, 745
AhdI	GACNNNNNGTC	1 cut(s)	578
AjiI	CACGTC	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	2 cut(s)	146, 286
AluI	AGCT	2 cut(s)	146, 286
Alw26I	GTCTC	2 cut(s)	386, 590
AoxI	GGCC	1 cut(s)	736
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	2 cut(s)	226, 378
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	736
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	209
BanI	GGYRCC	2 cut(s)	89, 338
BanII	GRGCYC	1 cut(s)	130
BbrPI	CACGTG	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	6 cut(s)	80, 146, 287, 329, 496, 727
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	386, 590
BfaI	CTAG	2 cut(s)	53, 729
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	313, 467
BlsI	GCNGC	2 cut(s)	314, 468
Bme1390I	CCNGG	2 cut(s)	195, 389
BmeRI	GACNNNNNGTC	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	736
BmiI	GGNNCC	3 cut(s)	91, 127, 340
BmrFI	CCNGG	2 cut(s)	195, 389
BpiI	GAAGAC	1 cut(s)	577
BpuMI	CCSGG	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 348, 503
Bse3DI	GCAATG	2 cut(s)	260, 644
BseBI	CCWGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	298, 738
BseLI	CCNNNNNNNGG	3 cut(s)	56, 348, 503
BseMI	GCAATG	2 cut(s)	260, 644
BseMII	CTCAG	3 cut(s)	273, 480, 489
BseRI	GAGGAG	1 cut(s)	693
BseXI	GCAGC	1 cut(s)	324
BshFI	GGCC	1 cut(s)	738
BshNI	GGYRCC	2 cut(s)	89, 338
BsiSI	CCGG	2 cut(s)	389, 607
BslI	CCNNNNNNNGG	3 cut(s)	56, 348, 503
BsmAI	GTCTC	2 cut(s)	386, 590
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	1 cut(s)	738
Bsp1286I	GDGCHC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	290, 466
BspANI	GGCC	1 cut(s)	738
BspCNI	CTCAG	3 cut(s)	274, 481, 490
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	91, 127, 340
BspMI	ACCTGC	1 cut(s)	47
BspT107I	GGYRCC	2 cut(s)	89, 338
BsrDI	GCAATG	2 cut(s)	260, 644
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	113, 369
Bst6I	CTCTTC	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	267, 288
BstDEI	CTNAG	3 cut(s)	282, 489, 498
BstF5I	GGATG	2 cut(s)	298, 738
BstHHI	GCGC	1 cut(s)	122
BstMAI	GTCTC	2 cut(s)	386, 590
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 271, 539, 646
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	193, 387
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	738
BtrI	CACGTC	1 cut(s)	575
BtsCI	GGATG	2 cut(s)	298, 738
BtsI	GCAGTG	2 cut(s)	276, 696
BtsIMutI	CAGTG	3 cut(s)	276, 279, 696
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	267, 288
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	736
Csp6I	GTAC	2 cut(s)	46, 507
CviAII	CATG	6 cut(s)	140, 149, 323, 538, 661, 723
CviQI	GTAC	2 cut(s)	46, 507
DdeI	CTNAG	3 cut(s)	282, 489, 498
DriI	GACNNNNNGTC	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	588
Eam1105I	GACNNNNNGTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	130
Eco72I	CACGTG	1 cut(s)	566
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	6 cut(s)	143, 152, 326, 541, 664, 726
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	6 cut(s)	139, 148, 322, 537, 660, 722
Fnu4HI	GCNGC	2 cut(s)	313, 467
FokI	GGATG	2 cut(s)	305, 745
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	313, 467
FspBI	CTAG	2 cut(s)	53, 729
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	313, 467
HaeIII	GGCC	1 cut(s)	738
HapII	CCGG	2 cut(s)	389, 607
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	6 cut(s)	143, 152, 326, 541, 664, 726
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	2 cut(s)	389, 607
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	161, 237
Hpy188III	TCNNGA	3 cut(s)	149, 176, 497
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	239, 423
HpyCH4III	ACNGT	2 cut(s)	113, 369
HpyCH4IV	ACGT	2 cut(s)	565, 574
HpyCH4V	TGCA	9 cut(s)	4, 30, 269, 274, 312, 332, 614, 671, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 271, 539, 646
HpyF3I	CTNAG	3 cut(s)	282, 489, 498
HpySE526I	ACGT	2 cut(s)	565, 574
Hsp92II	CATG	6 cut(s)	143, 152, 326, 541, 664, 726
HspAI	GCGC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	324
MaeI	CTAG	2 cut(s)	53, 729
MaeII	ACGT	2 cut(s)	565, 574
MaeIII	GTNAC	1 cut(s)	113
MboII	GAAGA	4 cut(s)	95, 408, 582, 605
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	4 cut(s)	131, 226, 378, 632
MnlI	CCTC	3 cut(s)	352, 618, 671
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	2 cut(s)	389, 607
MspR9I	CCNGG	2 cut(s)	195, 389
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	4 cut(s)	96, 271, 539, 646
NciI	CCSGG	1 cut(s)	389
NlaIII	CATG	6 cut(s)	143, 152, 326, 541, 664, 726
NlaIV	GGNNCC	3 cut(s)	91, 127, 340
PagI	TCATGA	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	493
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	314, 468
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
Ppu21I	YACGTR	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	193
PspCI	CACGTG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	91, 127, 340
PspPI	GGNCC	1 cut(s)	736
RsaI	GTAC	2 cut(s)	47, 508
RsaNI	GTAC	2 cut(s)	46, 507
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	2 cut(s)	313, 467
Sau96I	GGNCC	1 cut(s)	736
ScrFI	CCNGG	2 cut(s)	195, 389
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	9 cut(s)	12, 61, 148, 216, 288, 344, 415, 568, 577
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	4 cut(s)	131, 226, 378, 632
SsiI	CCGC	2 cut(s)	290, 466
SspMI	CTAG	2 cut(s)	53, 729
StyD4I	CCNGG	2 cut(s)	193, 387
TaaI	ACNGT	2 cut(s)	113, 369
TaiI	ACGT	2 cut(s)	568, 577
TaqI	TCGA	2 cut(s)	207, 676
TasI	AATT	4 cut(s)	131, 226, 378, 632
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	493
TscAI	CASTG	3 cut(s)	276, 286, 703
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	5 cut(s)	94, 128, 239, 258, 606
TspRI	CASTG	3 cut(s)	276, 286, 703
XapI	RAATTY	2 cut(s)	226, 378
XspI	CTAG	2 cut(s)	53, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.