Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17674342 .. 17674875

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGAACATCCGCTTCATCTCCACAACTTATGTTCAACCCAAAAACCAAATTGGTCAGTATCCTAAAATTCAATTAACTCCATGTGATGTTCAATTACTGCTAGTAGATACGATCCAAAAAGGCCTTCTCTTCCACAAACCCGAACCCGATCACGAAGAAGACCTCAACGACAAGCAGAGGTTGAAGCTGATTGAGCACCTGAAAGCCTCCTTCTCACTCACATTGGACATCTTCTACCCACTTGCTGGACGTCTGGCCGTCACCAAAAATGACGACGACAACACGGTCTCGTTCTCCGTGGACTGCAATGGAGCTGGAGCCCAATTTGTCCATGCAGCCGCGGATGGTGTCACCGTGGCCAATATCCTCGACCCTGTTTATGTTCCGGATAACATCGTCTACTCTTTCTTTTTGATGAATGGTGCAGTAAACTACGAAGGTAAGTCCAAACCCTTGCTCGCAATGCAAGTAACTGAGCTCGTTGATGGCATTTTCATTGGTTTGACTATGAACCACGCACTCTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

177

Amino Acids

19.73

Weight (kDa)

4.93

Isoelectric Point (pI)

19.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	4 - 176	7.8e-30	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AatII	GACGTC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	3 cut(s)	13, 342, 344
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	2 cut(s)	258, 360
AcsI	RAATTY	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	38, 74, 95, 187
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	3 cut(s)	190, 317, 481
AluI	AGCT	3 cut(s)	190, 317, 481
Alw21I	GWGCWC	2 cut(s)	201, 483
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	3 cut(s)	124, 258, 360
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	256, 346
BalI	TGGCCA	1 cut(s)	362
BanII	GRGCYC	2 cut(s)	325, 483
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	201, 483
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	341, 482
BceAI	ACGGC	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	72
BisI	GCNGC	2 cut(s)	339, 342
BlsI	GCNGC	2 cut(s)	340, 343
BmiI	GGNNCC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	3 cut(s)	300, 342, 357
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse3DI	GCAATG	2 cut(s)	316, 471
BseAI	TCCGGA	1 cut(s)	388
BseDI	CCNNGG	3 cut(s)	300, 342, 357
BseGI	GGATG	2 cut(s)	9, 352
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	2 cut(s)	316, 471
BseMII	CTCAG	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	126, 260, 362
BsiHKAI	GWGCWC	2 cut(s)	201, 483
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	126, 260, 362
Bso31I	GGTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	3 cut(s)	201, 325, 483
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	114, 151
BspACI	CCGC	3 cut(s)	13, 342, 344
BspANI	GGCC	3 cut(s)	126, 260, 362
BspCNI	CTCAG	1 cut(s)	469
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	295
BsrDI	GCAATG	2 cut(s)	316, 471
BssECI	CCNNGG	3 cut(s)	300, 342, 357
BssMI	GATC	2 cut(s)	114, 151
BssNI	GRCGYC	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	289, 358
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	3 cut(s)	300, 342, 357
BstF5I	GGATG	2 cut(s)	9, 352
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	2 cut(s)	117, 154
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	114, 151
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 466
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	126, 260, 362
BtgI	CCRYGG	3 cut(s)	300, 342, 357
BtsCI	GGATG	2 cut(s)	9, 352
Cac8I	GCNNGC	1 cut(s)	462
Cfr42I	CCGCGG	1 cut(s)	345
CviAII	CATG	2 cut(s)	84, 335
CviJI	RGCY	9 cut(s)	126, 190, 209, 260, 317, 323, 341, 362, 481
CviKI_1	RGCY	9 cut(s)	126, 190, 209, 260, 317, 323, 341, 362, 481
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	2 cut(s)	116, 153
DpnII	GATC	2 cut(s)	114, 151
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	2 cut(s)	258, 360
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	481
Eco147I	AGGCCT	1 cut(s)	126
Eco24I	GRGCYC	2 cut(s)	325, 483
Eco31I	GGTCTC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	481
EcoICRI	GAGCTC	1 cut(s)	481
EcoT38I	GRGCYC	2 cut(s)	325, 483
FaeI	CATG	2 cut(s)	87, 338
FaiI	YATR	5 cut(s)	33, 85, 336, 384, 512
FatI	CATG	2 cut(s)	83, 334
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	339, 342
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	2 cut(s)	325, 483
Fsp4HI	GCNGC	2 cut(s)	339, 342
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	2 cut(s)	339, 342
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	3 cut(s)	126, 260, 362
HapII	CCGG	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	87, 338
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	2 cut(s)	256, 346
Hpy166II	GTNNAC	3 cut(s)	304, 403, 433
Hpy188III	TCNNGA	2 cut(s)	155, 389
Hpy8I	GTNNAC	3 cut(s)	304, 403, 433
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	137, 223, 434
HpyCH4III	ACNGT	2 cut(s)	289, 358
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	4 cut(s)	309, 338, 428, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 466
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	253
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	87, 338
Kpn2I	TCCGGA	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	114, 151
LmnI	GCTCC	2 cut(s)	314, 320
LpnPI	CCDG	6 cut(s)	215, 234, 242, 303, 390, 402
Lsp1109I	GCAGC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	3 cut(s)	262, 352, 472
MalI	GATC	2 cut(s)	116, 153
MboI	GATC	2 cut(s)	114, 151
MboII	GAAGA	4 cut(s)	124, 170, 173, 226
MhlI	GDGCHC	3 cut(s)	201, 325, 483
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	5 cut(s)	51, 69, 74, 95, 326
MluNI	TGGCCA	1 cut(s)	362
MnlI	CCTC	4 cut(s)	174, 176, 220, 380
Mox20I	TGGCCA	1 cut(s)	362
MroI	TCCGGA	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	196, 466
NdeII	GATC	2 cut(s)	114, 151
NlaIII	CATG	2 cut(s)	87, 338
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	262, 352
PceI	AGGCCT	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	340, 343
Psp124BI	GAGCTC	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	483
SacII	CCGCGG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	2 cut(s)	339, 342
Sau3AI	GATC	2 cut(s)	114, 151
SduI	GDGCHC	3 cut(s)	201, 325, 483
SetI	ASST	8 cut(s)	168, 185, 192, 204, 256, 319, 445, 483
Sfr303I	CCGCGG	1 cut(s)	345
SgrBI	CCGCGG	1 cut(s)	345
Sse9I	AATT	5 cut(s)	51, 69, 74, 95, 326
SseBI	AGGCCT	1 cut(s)	126
SsiI	CCGC	3 cut(s)	13, 342, 344
SspMI	CTAG	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	289, 358
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	372
TasI	AATT	5 cut(s)	51, 69, 74, 95, 326
TauI	GCSGC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseFI	GTSAC	2 cut(s)	262, 352
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	2 cut(s)	262, 352
TspDTI	ATGAA	4 cut(s)	7, 434, 487, 527
TspGWI	ACGGA	1 cut(s)	289
Van91I	CCANNNNNTGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.