Rmu_sc0000444.1_g000002

Acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000444.1
OG0000375
Physical Location & Seq
Reverse (-)
7574 .. 8624
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000444.1_g000002.1.cds

Sequence Viewer

Length: 882 bp
atggatgttttccctctaaatggaattaaaaactaccaaggcacttccgagccgttacttgcggttcaagtaacggagcttgcagacggtattttcatcggttgcaccatcaaccacaccgctgttgatggcacttccttttggcatttcttcaattcttggtctgaaatctctcgcggctttgatcgcgtgtcgaagcctcctgttcttaaccgttggtttcttgatggaaccaatcttcccatccgcatttccttcccgaatgaccacaacaaagtgctcttcgacgaaatcatggatatcgaaccaccaccactaaaagagagggtctttcacttctcaaaggaaagcatcgctcaattgaaagcaaaagccaatgccgagattgatagcaatacaccaatctcctcaagcagagctagatcgagattgaacccacctttgccacaagaatactttggcattgcatgcagttcaagctggcatgggacggtgaccatgaaagcaggcgagctacttgaacgtggactaggttttgtggccagggaaatgaacaagatggttgctttgcacacagaagagaaaattcgaagcttcttagagtccggggttcaagaacccaagttacatacagaaggcaacatggctgcgaaggctttgatcacaagcagctccccgcggttcaatgtgtacgggattaatgactttggatggggaaggccggtggtggtgaggagcggtgctgggaacaagtcacacgggaagattaaggtgttttcaggggtggaagagggtagcattgatattgaaacttgtcttttggctgagacactggaggctatgggaaataattcagaattcatggaagcggttactctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

293

Amino Acids

32.43

Weight (kDa)

5.8

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 738
AccII CGCG 3 cut(s) 177, 189, 679
AciI CCGC 8 cut(s) 62, 120, 177, 247, 677, 679, 738, 869
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 2 cut(s) 585, 857
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 9 cut(s) 68, 154, 364, 433, 477, 521, 614, 685, 809
AjnI CCWGG 1 cut(s) 542
AloI GAACNNNNNNTCC 2 cut(s) 223, 255
AluBI AGCT 6 cut(s) 79, 419, 480, 514, 594, 672
AluI AGCT 6 cut(s) 79, 419, 480, 514, 594, 672
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 821
AoxI GGCC 2 cut(s) 540, 719
ApeKI GCWGC 2 cut(s) 647, 669
ApoI RAATTY 2 cut(s) 585, 857
AseI ATTAAT 1 cut(s) 699
Asp700I GAANNNNTTC 1 cut(s) 850
AsuC2I CCSGG 1 cut(s) 607
AsuHPI GGTGA 2 cut(s) 505, 742
AsuII TTCGAA 1 cut(s) 589
BalI TGGCCA 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 634, 681
BccI CCATC 6 cut(s) 116, 122, 221, 251, 553, 705
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 544
BclI TGATCA 1 cut(s) 660
BcnI CCSGG 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 821
BfaI CTAG 2 cut(s) 420, 530
BfmI CTRYAG 1 cut(s) 878
BisI GCNGC 3 cut(s) 178, 648, 670
BlsI GCNGC 3 cut(s) 179, 649, 671
Bme1390I CCNGG 2 cut(s) 544, 607
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 544, 607
BmsI GCATC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 854
Bpu14I TTCGAA 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 37, 543, 606, 677
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 1 cut(s) 837
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 544
BseDI CCNNGG 4 cut(s) 37, 543, 606, 677
BseGI GGATG 3 cut(s) 10, 243, 716
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 816
BseNI ACTGG 1 cut(s) 837
BseRI GAGGAG 2 cut(s) 397, 748
BseXI GCAGC 2 cut(s) 634, 681
BseYI CCCAGC 1 cut(s) 743
Bsh1236I CGCG 3 cut(s) 177, 189, 679
BshFI GGCC 2 cut(s) 542, 721
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 606, 722
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 821
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 2 cut(s) 542, 721
Bsp119I TTCGAA 1 cut(s) 589
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 184, 422, 660
BspACI CCGC 8 cut(s) 62, 120, 177, 247, 677, 679, 738, 869
BspANI GGCC 2 cut(s) 542, 721
BspCNI CTCAG 1 cut(s) 817
BspFNI CGCG 3 cut(s) 177, 189, 679
BspLI GGNNCC 1 cut(s) 232
BspQI GCTCTTC 1 cut(s) 287
BspT104I TTCGAA 1 cut(s) 589
BsrBI CCGCTC 1 cut(s) 738
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 1 cut(s) 837
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 4 cut(s) 37, 543, 606, 677
BssMI GATC 3 cut(s) 184, 422, 660
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 544
Bst4CI ACNGT 3 cut(s) 89, 215, 493
Bst6I CTCTTC 3 cut(s) 287, 573, 783
BstAPI GCANNNNNTGC 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 589
BstC8I GCNNGC 5 cut(s) 81, 469, 482, 508, 512
BstDEI CTNAG 2 cut(s) 598, 825
BstDSI CCRYGG 1 cut(s) 677
BstEII GGTNACC 1 cut(s) 493
BstF5I GGATG 3 cut(s) 10, 243, 716
BstFNI CGCG 3 cut(s) 177, 189, 679
BstKTI GATC 3 cut(s) 187, 425, 663
BstMAI GTCTC 1 cut(s) 821
BstMBI GATC 3 cut(s) 184, 422, 660
BstMWI GCNNNNNNNGC 4 cut(s) 186, 468, 477, 653
BstNI CCWGG 1 cut(s) 544
BstNSI RCATGY 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 493
BstSCI CCNGG 2 cut(s) 542, 605
BstSFI CTRYAG 1 cut(s) 878
BstUI CGCG 3 cut(s) 177, 189, 679
BstV1I GCAGC 2 cut(s) 634, 681
BsuRI GGCC 2 cut(s) 542, 721
BtgI CCRYGG 1 cut(s) 677
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 3 cut(s) 10, 243, 716
BtsIMutI CAGTG 1 cut(s) 830
Cac8I GCNNGC 5 cut(s) 81, 469, 482, 508, 512
Cfr10I RCCGGY 1 cut(s) 721
Cfr42I CCGCGG 1 cut(s) 680
Csp6I GTAC 1 cut(s) 691
CviAII CATG 6 cut(s) 295, 468, 485, 499, 643, 862
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 2 cut(s) 598, 825
DpnI GATC 3 cut(s) 186, 424, 662
DpnII GATC 3 cut(s) 184, 422, 660
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 3 cut(s) 287, 573, 783
EarI CTCTTC 3 cut(s) 287, 573, 783
Eco130I CCWWGG 1 cut(s) 37
Eco32I GATATC 1 cut(s) 301
Eco91I GGTNACC 1 cut(s) 493
EcoO65I GGTNACC 1 cut(s) 493
EcoRI GAATTC 1 cut(s) 857
EcoRII CCWGG 1 cut(s) 542
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 6 cut(s) 298, 471, 488, 502, 646, 865
FaiI YATR 8 cut(s) 296, 469, 486, 500, 630, 644, 842, 863
FaqI GGGAC 1 cut(s) 502
FatI CATG 6 cut(s) 294, 467, 484, 498, 642, 861
FauI CCCGC 1 cut(s) 684
FbaI TGATCA 1 cut(s) 660
Fnu4HI GCNGC 3 cut(s) 178, 648, 670
FokI GGATG 3 cut(s) 17, 230, 723
Fsp4HI GCNGC 3 cut(s) 178, 648, 670
FspBI CTAG 2 cut(s) 420, 530
GluI GCNGC 3 cut(s) 178, 648, 670
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 1 cut(s) 854
HaeIII GGCC 2 cut(s) 542, 721
HapII CCGG 2 cut(s) 606, 722
Hin1II CATG 6 cut(s) 298, 471, 488, 502, 646, 865
HindIII AAGCTT 1 cut(s) 592
HinfI GANTC 1 cut(s) 602
HpaII CCGG 2 cut(s) 606, 722
HphI GGTGA 2 cut(s) 505, 742
Hpy166II GTNNAC 2 cut(s) 527, 691
Hpy188I TCNGA 3 cut(s) 49, 166, 856
Hpy188III TCNNGA 4 cut(s) 224, 259, 426, 614
Hpy8I GTNNAC 2 cut(s) 527, 691
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 4 cut(s) 265, 629, 646, 711
HpyCH4III ACNGT 3 cut(s) 89, 215, 493
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 5 cut(s) 83, 105, 467, 471, 571
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 468, 477, 653
HpyF3I CTNAG 2 cut(s) 598, 825
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 6 cut(s) 298, 471, 488, 502, 646, 865
Ksp22I TGATCA 1 cut(s) 660
KspI CCGCGG 1 cut(s) 680
Kzo9I GATC 3 cut(s) 184, 422, 660
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 3 cut(s) 76, 677, 735
Lsp1109I GCAGC 2 cut(s) 634, 681
LweI GCATC 1 cut(s) 360
MaeI CTAG 2 cut(s) 420, 530
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 6 cut(s) 54, 70, 493, 624, 753, 871
MalI GATC 3 cut(s) 186, 424, 662
MbiI CCGCTC 1 cut(s) 738
MboI GATC 3 cut(s) 184, 422, 660
MboII GAAGA 6 cut(s) 142, 230, 274, 590, 775, 800
MfeI CAATTG 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 282
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 6 cut(s) 24, 154, 359, 585, 850, 857
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 1 cut(s) 611
MnlI CCTC 7 cut(s) 24, 210, 318, 418, 726, 784, 829
Mox20I TGGCCA 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 850
MscI TGGCCA 1 cut(s) 542
MseI TTAA 4 cut(s) 27, 210, 699, 768
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 2 cut(s) 122, 679
MspI CCGG 2 cut(s) 606, 722
MspR9I CCNGG 2 cut(s) 544, 607
MunI CAATTG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 544
MvnI CGCG 3 cut(s) 177, 189, 679
MwoI GCNNNNNNNGC 4 cut(s) 186, 468, 477, 653
NciI CCSGG 1 cut(s) 607
NdeII GATC 3 cut(s) 184, 422, 660
NlaIII CATG 6 cut(s) 298, 471, 488, 502, 646, 865
NlaIV GGNNCC 1 cut(s) 232
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 2 cut(s) 493, 753
NspI RCATGY 1 cut(s) 471
NspV TTCGAA 1 cut(s) 589
PaeI GCATGC 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 850
PkrI GCNGC 3 cut(s) 179, 649, 671
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PshBI ATTAAT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 542
PspEI GGTNACC 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 1 cut(s) 542
PspN4I GGNNCC 1 cut(s) 232
PsrI GAACNNNNNNTAC 2 cut(s) 609, 641
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
SacII CCGCGG 1 cut(s) 680
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 4 cut(s) 27, 210, 699, 768
SatI GCNGC 3 cut(s) 178, 648, 670
Sau3AI GATC 3 cut(s) 184, 422, 660
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 2 cut(s) 544, 607
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 878
Sfr303I CCGCGG 1 cut(s) 680
SfuI TTCGAA 1 cut(s) 589
SgrBI CCGCGG 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
SphI GCATGC 1 cut(s) 471
Sse9I AATT 6 cut(s) 24, 154, 359, 585, 850, 857
SsiI CCGC 8 cut(s) 62, 120, 177, 247, 677, 679, 738, 869
SspMI CTAG 2 cut(s) 420, 530
StyD4I CCNGG 2 cut(s) 542, 605
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 3 cut(s) 89, 215, 493
TaiI ACGT 1 cut(s) 526
TaqI TCGA 5 cut(s) 194, 285, 303, 425, 589
TasI AATT 6 cut(s) 24, 154, 359, 585, 850, 857
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 4 cut(s) 27, 210, 699, 768
Tru9I TTAA 4 cut(s) 27, 210, 699, 768
TscAI CASTG 1 cut(s) 837
TseFI GTSAC 2 cut(s) 493, 753
TseI GCWGC 2 cut(s) 647, 669
Tsp45I GTSAC 2 cut(s) 493, 753
TspDTI ATGAA 4 cut(s) 85, 515, 566, 850
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 1 cut(s) 837
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 2 cut(s) 585, 857
XceI RCATGY 1 cut(s) 471
XmnI GAANNNNTTC 1 cut(s) 850
XspI CTAG 2 cut(s) 420, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.