Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17517741 .. 17519237

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG193500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAACTTGGTTCGAAACTATGAAGGGATTTTGAAACCATTGCTTGTGGCGCAAGTCACTGAGCTTGTTGATGGCATCTTTATCGGCTGCAGCATAAACCACGTAGTTATGGATGGTACCTCTTTCTGGCATTTCTTCAATACTTGGTCTGAAATTTCTCGTTTTGGCTCTGATCATGATAAAGTAGCTTCTCAAATTAGTACTAGTAGCACTCCTGTTTTCGGTCGTCAATTTCTTGTTGGCCTAATTGATCTCCCAGTTCACATTCCCTTCTCCCAACTTCAAATCCCGGAGAAGCTAGCTAGTTCCACATACCACCTCTTCTTCCAATTACATACAAAGGGTGTTTCACTTCCCCAAAGAAAAAGTCATCGCGCTCAAAGCAAAGGCCAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

132

Amino Acids

14.9

Weight (kDa)

9.3

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	8 - 105	1.3e-15	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AccII	CGCG	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	153
AfaI	GTAC	2 cut(s)	118, 202
AfiI	CCNNNNNNNGG	2 cut(s)	126, 221
AgsI	TTSAA	3 cut(s)	34, 139, 284
AhlI	ACTAGT	1 cut(s)	203
AluBI	AGCT	4 cut(s)	64, 188, 298, 302
AluI	AGCT	4 cut(s)	64, 188, 298, 302
AoxI	GGCC	2 cut(s)	241, 388
ApeKI	GCWGC	2 cut(s)	87, 90
ApoI	RAATTY	1 cut(s)	153
ArsI	GACNNNNNNTTYG	2 cut(s)	352, 384
Asp718I	GGTACC	1 cut(s)	116
AspLEI	GCGC	2 cut(s)	52, 377
AsuC2I	CCSGG	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	13
AsuNHI	GCTAGC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	74, 102
BccI	CCATC	2 cut(s)	65, 107
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	290
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	3 cut(s)	204, 299, 303
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	2 cut(s)	88, 91
BlsI	GCNGC	2 cut(s)	89, 92
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	84
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 221
Bse1I	ACTGG	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	126, 221
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	74, 102
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	243, 390
BshNI	GGYRCC	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	126, 221
BsnI	GGCC	2 cut(s)	243, 390
Bsp119I	TTCGAA	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	172, 250
BspANI	GGCC	2 cut(s)	243, 390
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	92
BspOI	GCTAGC	1 cut(s)	302
BspT104I	TTCGAA	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	172, 250
Bst6I	CTCTTC	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	103
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	52, 377
BstKTI	GATC	2 cut(s)	175, 253
BstMBI	GATC	2 cut(s)	172, 250
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 381
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	74, 102
BsuRI	GGCC	2 cut(s)	243, 390
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	300
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	2 cut(s)	52, 377
Csp6I	GTAC	2 cut(s)	117, 201
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	8 cut(s)	64, 87, 168, 188, 243, 298, 302, 390
CviKI_1	RGCY	8 cut(s)	64, 87, 168, 188, 243, 298, 302, 390
CviQI	GTAC	2 cut(s)	117, 201
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	174, 252
DpnII	GATC	2 cut(s)	172, 250
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
FaeI	CATG	1 cut(s)	179
FaiI	YATR	6 cut(s)	21, 95, 110, 177, 313, 336
FatI	CATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	88, 91
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	88, 91
FspBI	CTAG	3 cut(s)	204, 299, 303
GlaI	GCGC	2 cut(s)	51, 376
GluI	GCNGC	2 cut(s)	88, 91
HaeIII	GGCC	2 cut(s)	243, 390
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	2 cut(s)	52, 377
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	2 cut(s)	50, 375
HinP1I	GCGC	2 cut(s)	50, 375
HpaII	CCGG	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	151, 172
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	17, 280
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 381
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	2 cut(s)	50, 375
KpnI	GGTACC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	172, 250
LpnPI	CCDG	4 cut(s)	112, 228, 270, 303
Lsp1109I	GCAGC	2 cut(s)	74, 102
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	3 cut(s)	204, 299, 303
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	174, 252
MboI	GATC	2 cut(s)	172, 250
MboII	GAAGA	3 cut(s)	127, 313, 316
MluCI	AATT	5 cut(s)	153, 195, 230, 246, 329
MnlI	CCTC	2 cut(s)	130, 329
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	49, 381
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	172, 250
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	13
PagI	TCATGA	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	89, 92
Ppu21I	YACGTR	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	92
RsaI	GTAC	2 cut(s)	118, 202
RsaNI	GTAC	2 cut(s)	117, 201
SatI	GCNGC	2 cut(s)	88, 91
Sau3AI	GATC	2 cut(s)	172, 250
ScaI	AGTACT	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	7 cut(s)	66, 105, 122, 190, 300, 304, 321
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	13
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	5 cut(s)	153, 195, 230, 246, 329
SspMI	CTAG	3 cut(s)	204, 299, 303
StyD4I	CCNGG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	13
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	5 cut(s)	153, 195, 230, 246, 329
TatI	WGTACW	1 cut(s)	200
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	87, 90
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	17, 36
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	153
XspI	CTAG	3 cut(s)	204, 299, 303
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.