Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17156000 .. 17203499

Gene Structure 47500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG190200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAAGAAGCAGCGACTCGTTTTGATGGGAAATCAGTTCAAAAAGTTCTAGCTGCATTGGAAGAAAAGCTGGTGCTTAAAAAGGTTTCCAAGAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCAGGTGCATGATGACCCTATAGGGTATATAGATTTGACAACAAAGCAAGAAAAATCAAAGAGGCAAGAAAGGCAGGAGTTCAGTTTTGTGGAAGAATTTAGCGCCCCGTTGCCTAGATTTGGAGCCGTGACTGAAGTCGAAGACAAGGTAACTTGTATTTCTATCGACTGCAATGGCTCCGGAGCTCAATTTGTCCACGCAGCTAATGATTGCGTCACCATGGACGATTTACTCAACCCTGATTGCATTCCTGATAACATCATCCACAATCTTTTTCCCTTGAATTCGGTTGCGAACTATGAAGGGATTTCAAAACCATTGCTTGCGGGCTTGCGGGCTTGCGGGCTTGCGGCACAAGTCACTGATCTTGTCGATGGCATCTTCATCAGTTGCAGCTCAAACCATGCCGTTATAGATGGTACCTCTTTCTGGCATTTCTTTAATACTTGGTCTGAAATCTCTCGTATTGGTTCAGATCAAATCTCTGGAGTACCACTTCCTGCTTGTGGTAGGGAGTTTTGTGATGGCATAACTGATCTCCCAATTCGCCTACCATTTTCTTACAGTGAAACAATCAAGGGTAAGAAAATAATTGAACCATCTACAGATCATTTTTTACAAACGGTAGTATTTCATTTTCCCAAAGAAAAAATAGTCGAGCTCAAAGCAAAGGCCAATGCTGAGATGGGCACCAATAATGTCATCTCGTCGCTTCAAGCACTAATGGCTCATCTTTGGCGAGCCATAACACGTAGCAACCATGACCTCAACCCTGATGAAGAGACTACATATATGGTTGTTGTAGGATTGAGGCAAAGATTGATGCCACCATTGCCAAAGGAATATCTTGGAAATGCCTACATAGGGGTTATGATTAAGTCCACTGCCAATGAATTGCTACAACAAGGACTAGGCTGGGTGGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

375

Amino Acids

41.53

Weight (kDa)

5.44

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	118 - 374	4e-44	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	2 cut(s)	617, 887
AccIII	TCCGGA	1 cut(s)	377
AciI	CCGC	4 cut(s)	524, 532, 540, 548
AcsI	RAATTY	2 cut(s)	293, 481
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	619, 690
AfiI	CCNNNNNNNGG	4 cut(s)	317, 627, 704, 1062
AflIII	ACRYGT	1 cut(s)	947
AgsI	TTSAA	5 cut(s)	41, 481, 510, 794, 914
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	7 cut(s)	53, 70, 197, 383, 401, 594, 859
AluI	AGCT	7 cut(s)	53, 70, 197, 383, 401, 594, 859
Alw21I	GWGCWC	2 cut(s)	385, 861
Alw26I	GTCTC	1 cut(s)	974
Aor13HI	TCCGGA	1 cut(s)	377
AoxI	GGCC	1 cut(s)	870
ApeKI	GCWGC	4 cut(s)	11, 53, 398, 591
ApoI	RAATTY	2 cut(s)	293, 481
Asp718I	GGTACC	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	890
BanI	GGYRCC	2 cut(s)	617, 887
BanII	GRGCYC	2 cut(s)	385, 861
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	385, 861
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	4 cut(s)	23, 40, 410, 603
BccI	CCATC	6 cut(s)	20, 566, 608, 716, 805, 877
BceAI	ACGGC	2 cut(s)	308, 590
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	974
BfaI	CTAG	3 cut(s)	50, 312, 1109
BfmI	CTRYAG	2 cut(s)	216, 801
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	5 cut(s)	12, 54, 399, 549, 592
BlsI	GCNGC	5 cut(s)	13, 55, 400, 550, 593
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	4 cut(s)	322, 376, 619, 889
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	3 cut(s)	97, 585, 1011
BoxI	GACNNNNGTC	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	705
Bpu10I	CCTNAGC	2 cut(s)	159, 198
BsaAI	YACGTR	1 cut(s)	950
BsaJI	CCNNGG	2 cut(s)	145, 417
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	4 cut(s)	317, 627, 704, 1062
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	3 cut(s)	376, 515, 1028
BseAI	TCCGGA	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	145, 417
BseGI	GGATG	2 cut(s)	112, 459
BseLI	CCNNNNNNNGG	4 cut(s)	317, 627, 704, 1062
BseMI	GCAATG	3 cut(s)	376, 515, 1028
BseMII	CTCAG	3 cut(s)	150, 212, 870
BseNI	ACTGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	890
BseXI	GCAGC	4 cut(s)	23, 40, 410, 603
BseYI	CCCAGC	1 cut(s)	1113
BshFI	GGCC	1 cut(s)	872
BshNI	GGYRCC	2 cut(s)	617, 887
BsiHKAI	GWGCWC	2 cut(s)	385, 861
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	4 cut(s)	317, 627, 704, 1062
BsmAI	GTCTC	1 cut(s)	974
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	1 cut(s)	872
Bsp1286I	GDGCHC	3 cut(s)	385, 861, 890
Bsp13I	TCCGGA	1 cut(s)	377
Bsp143I	GATC	5 cut(s)	190, 562, 673, 733, 805
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	4 cut(s)	524, 532, 540, 548
BspANI	GGCC	1 cut(s)	872
BspCNI	CTCAG	3 cut(s)	151, 211, 871
BspEI	TCCGGA	1 cut(s)	377
BspLI	GGNNCC	4 cut(s)	322, 376, 619, 889
BspT107I	GGYRCC	2 cut(s)	617, 887
BsrDI	GCAATG	3 cut(s)	376, 515, 1028
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	145, 417
BssMI	GATC	5 cut(s)	190, 562, 673, 733, 805
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	764, 823
Bst6I	CTCTTC	1 cut(s)	972
BstBAI	YACGTR	1 cut(s)	950
BstC8I	GCNNGC	8 cut(s)	522, 526, 530, 534, 538, 542, 546, 939
BstDEI	CTNAG	3 cut(s)	159, 198, 879
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	112, 459
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	5 cut(s)	193, 565, 676, 736, 808
BstMAI	GTCTC	1 cut(s)	974
BstMBI	GATC	5 cut(s)	190, 562, 673, 733, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 923, 1030
BstNI	CCWGG	1 cut(s)	146
BstPAI	GACNNNNGTC	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	2 cut(s)	216, 801
BstSLI	GKGCMC	1 cut(s)	890
BstV1I	GCAGC	4 cut(s)	23, 40, 410, 603
BstV2I	GAAGAC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	872
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	112, 459
BtsI	GCAGTG	1 cut(s)	1080
BtsIMutI	CAGTG	3 cut(s)	558, 769, 1080
Cac8I	GCNNGC	8 cut(s)	522, 526, 530, 534, 538, 542, 546, 939
CfoI	GCGC	1 cut(s)	302
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	618, 689
CviAII	CATG	4 cut(s)	206, 418, 602, 959
CviQI	GTAC	2 cut(s)	618, 689
DdeI	CTNAG	3 cut(s)	159, 198, 879
DpnI	GATC	5 cut(s)	192, 564, 675, 735, 807
DpnII	GATC	5 cut(s)	190, 562, 673, 733, 805
Eam1104I	CTCTTC	1 cut(s)	972
EarI	CTCTTC	1 cut(s)	972
Ecl136II	GAGCTC	2 cut(s)	383, 859
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	2 cut(s)	385, 861
Eco53kI	GAGCTC	2 cut(s)	383, 859
Eco57I	CTGAAG	1 cut(s)	351
EcoICRI	GAGCTC	2 cut(s)	383, 859
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	385, 861
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	4 cut(s)	209, 421, 605, 962
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	4 cut(s)	205, 417, 601, 958
FauI	CCCGC	3 cut(s)	517, 525, 533
Fnu4HI	GCNGC	5 cut(s)	12, 54, 399, 549, 592
FokI	GGATG	2 cut(s)	119, 446
FriOI	GRGCYC	2 cut(s)	385, 861
Fsp4HI	GCNGC	5 cut(s)	12, 54, 399, 549, 592
FspBI	CTAG	3 cut(s)	50, 312, 1109
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	5 cut(s)	12, 54, 399, 549, 592
GsaI	CCCAGC	1 cut(s)	1117
GsuI	CTGGAG	1 cut(s)	705
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	872
HapII	CCGG	1 cut(s)	378
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	4 cut(s)	209, 421, 605, 962
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	394, 1080
Hpy188I	TCNGA	2 cut(s)	652, 673
Hpy188III	TCNNGA	3 cut(s)	378, 449, 684
Hpy8I	GTNNAC	2 cut(s)	394, 1080
Hpy99I	CGWCG	1 cut(s)	910
HpyAV	CCTTC	3 cut(s)	91, 97, 494
HpyCH4III	ACNGT	2 cut(s)	764, 823
HpyCH4IV	ACGT	1 cut(s)	949
HpyCH4V	TGCA	6 cut(s)	56, 176, 205, 369, 444, 591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 923, 1030
HpyF3I	CTNAG	3 cut(s)	159, 198, 879
HpySE526I	ACGT	1 cut(s)	949
Hsp92II	CATG	4 cut(s)	209, 421, 605, 962
HspAI	GCGC	1 cut(s)	300
Kpn2I	TCCGGA	1 cut(s)	377
KpnI	GGTACC	1 cut(s)	621
Kzo9I	GATC	5 cut(s)	190, 562, 673, 733, 805
LmnI	GCTCC	3 cut(s)	320, 380, 380
Lsp1109I	GCAGC	4 cut(s)	23, 40, 410, 603
LweI	GCATC	3 cut(s)	97, 585, 1011
MaeI	CTAG	3 cut(s)	50, 312, 1109
MaeII	ACGT	1 cut(s)	949
MaeIII	GTNAC	4 cut(s)	325, 346, 412, 556
MalI	GATC	5 cut(s)	192, 564, 675, 735, 807
MboI	GATC	5 cut(s)	190, 562, 673, 733, 805
MboII	GAAGA	9 cut(s)	17, 74, 106, 197, 200, 302, 350, 571, 989
MhlI	GDGCHC	3 cut(s)	385, 861, 890
MluCI	AATT	6 cut(s)	293, 386, 481, 741, 789, 1091
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	5 cut(s)	154, 252, 631, 974, 1002
MroI	TCCGGA	1 cut(s)	377
MseI	TTAA	4 cut(s)	78, 126, 639, 1074
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	268, 923, 1030
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	5 cut(s)	190, 562, 673, 733, 805
NlaIII	CATG	4 cut(s)	209, 421, 605, 962
NlaIV	GGNNCC	4 cut(s)	322, 376, 619, 889
NmuCI	GTSAC	3 cut(s)	325, 412, 556
PctI	GAATGC	1 cut(s)	444
PkrI	GCNGC	5 cut(s)	13, 55, 400, 550, 593
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	950
PshAI	GACNNNNGTC	1 cut(s)	332
Psp124BI	GAGCTC	2 cut(s)	385, 861
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	1113
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	4 cut(s)	322, 376, 619, 889
RsaI	GTAC	2 cut(s)	619, 690
RsaNI	GTAC	2 cut(s)	618, 689
SacI	GAGCTC	2 cut(s)	385, 861
SaqAI	TTAA	4 cut(s)	78, 126, 639, 1074
SatI	GCNGC	5 cut(s)	12, 54, 399, 549, 592
Sau3AI	GATC	5 cut(s)	190, 562, 673, 733, 805
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	3 cut(s)	385, 861, 890
SfaNI	GCATC	3 cut(s)	97, 585, 1011
SfcI	CTRYAG	2 cut(s)	216, 801
Sse9I	AATT	6 cut(s)	293, 386, 481, 741, 789, 1091
SsiI	CCGC	4 cut(s)	524, 532, 540, 548
SspMI	CTAG	3 cut(s)	50, 312, 1109
SstI	GAGCTC	2 cut(s)	385, 861
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	764, 823
TaiI	ACGT	1 cut(s)	952
TaqI	TCGA	4 cut(s)	336, 363, 570, 855
TasI	AATT	6 cut(s)	293, 386, 481, 741, 789, 1091
TauI	GCSGC	1 cut(s)	551
Tru1I	TTAA	4 cut(s)	78, 126, 639, 1074
Tru9I	TTAA	4 cut(s)	78, 126, 639, 1074
TscAI	CASTG	3 cut(s)	565, 769, 1087
TseFI	GTSAC	3 cut(s)	325, 412, 556
TseI	GCWGC	4 cut(s)	11, 53, 398, 591
Tsp45I	GTSAC	3 cut(s)	325, 412, 556
TspDTI	ATGAA	5 cut(s)	513, 571, 821, 990, 1104
TspRI	CASTG	3 cut(s)	565, 769, 1087
XapI	RAATTY	2 cut(s)	293, 481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XspI	CTAG	3 cut(s)	50, 312, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.