RLG00000000204

Acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
OG0000375
Physical Location & Seq
Forward (+)
946759 .. 947412
654 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000204

Sequence Viewer

Length: 654 bp
ATGGGACCTCCAGCTTCTTCTTGTGGATCCAATCCCGAAGGGAGACTTTTTTACAAACCTAAAACCTTTTCGCAAAACAACAGTCAGCATCTCAAAACCTCCCTTTCTCGCACCCTCGACTTCTTTCCCCCATTCTCCGGCCGCCTTGCCACTATAAACCACCACGATAACACGACCTCTTTCTTCATTAACTGTAACAATGCTGGGGCTCTTTTCGTCCATTCTAGAGCTGATGGCGTTACAGTCTCCGATATCAATGACTCTGTCTATGTACCTCGAGATCTTGTCGATTCACTTATCCCTCTAAACGGAGTTAAAAACTACCAAGGCAATTCCGAGCCGTTACTTGCGGTTCAAGTAACGGAGCTTGCAGACGGTGTTTTCATAGGTTGCACCATCAACCACACCGTTGTTGATGGCACTTCCTTTTGGCATTTCTTTAATTCTTGGTCTGAAATCTCTCGCGGCTTTGATCGCGTGTCGAAGCTTCCTGTTCTTAACCGTTGGTTTCTTGATGGAACCCATCTTCCCATCCGCATTTCCTTCCCGAATGACCACAACAAAATGCTCTTCGACGAAATCATGGATATAAAACCACCACCACTAAAAGAGATGGTCTTTCACTTCTCAAAGGAAAGCATCGCTCAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

218

Amino Acids

24.33

Weight (kDa)

6.28

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 15 - 208 4e-42 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 465, 477
AciI CCGC 4 cut(s) 142, 350, 465, 535
AclWI GGATC 2 cut(s) 21, 34
AcoI YGGCCR 1 cut(s) 139
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 137, 308
AgsI TTSAA 1 cut(s) 356
AloI GAACNNNNNNTCC 2 cut(s) 511, 543
AluBI AGCT 4 cut(s) 14, 230, 367, 487
AluI AGCT 4 cut(s) 14, 230, 367, 487
Alw26I GTCTC 2 cut(s) 37, 250
AlwI GGATC 2 cut(s) 21, 34
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 1 cut(s) 139
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
AspS9I GGNCC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 1 cut(s) 5
BamHI GGATCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 211
BccI CCATC 7 cut(s) 227, 404, 410, 509, 531, 539, 607
BceAI ACGGC 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 37, 250
BfaI CTAG 1 cut(s) 225
BglII AGATCT 1 cut(s) 280
BisI GCNGC 2 cut(s) 142, 466
BlsI GCNGC 2 cut(s) 143, 467
Bme18I GGWCC 1 cut(s) 5
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 3 cut(s) 6, 28, 520
BmsI GCATC 2 cut(s) 97, 648
BsaJI CCNNGG 1 cut(s) 325
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 308
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 137, 308
BseX3I CGGCCG 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 203
Bsh1236I CGCG 2 cut(s) 465, 477
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 137, 308
BsmAI GTCTC 2 cut(s) 37, 250
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 26, 280, 472
BspACI CCGC 4 cut(s) 142, 350, 465, 535
BspANI GGCC 1 cut(s) 141
BspFNI CGCG 2 cut(s) 465, 477
BspLI GGNNCC 3 cut(s) 6, 28, 520
BspPI GGATC 2 cut(s) 21, 34
BspQI GCTCTTC 1 cut(s) 575
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 3 cut(s) 26, 280, 472
BssT1I CCWWGG 1 cut(s) 325
Bst4CI ACNGT 6 cut(s) 83, 194, 244, 377, 409, 503
Bst6I CTCTTC 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 369
BstF5I GGATG 1 cut(s) 531
BstFNI CGCG 2 cut(s) 465, 477
BstKTI GATC 3 cut(s) 29, 283, 475
BstMAI GTCTC 2 cut(s) 37, 250
BstMBI GATC 3 cut(s) 26, 280, 472
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 474
BstUI CGCG 2 cut(s) 465, 477
BstX2I RGATCY 2 cut(s) 26, 280
BstYI RGATCY 2 cut(s) 26, 280
BstZI CGGCCG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 625
BtsCI GGATG 1 cut(s) 531
Cac8I GCNNGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 272
CviAII CATG 1 cut(s) 583
CviJI RGCY 8 cut(s) 14, 141, 209, 230, 340, 367, 468, 487
CviKI_1 RGCY 8 cut(s) 14, 141, 209, 230, 340, 367, 468, 487
CviQI GTAC 1 cut(s) 272
DpnI GATC 3 cut(s) 28, 282, 474
DpnII GATC 3 cut(s) 26, 280, 472
EaeI YGGCCR 1 cut(s) 139
EagI CGGCCG 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
EclXI CGGCCG 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 211
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 5
Eco52I CGGCCG 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 5
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 1 cut(s) 586
FaiI YATR 5 cut(s) 155, 270, 386, 584, 590
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 142, 466
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 2 cut(s) 142, 466
FspBI CTAG 1 cut(s) 225
GluI GCNGC 2 cut(s) 142, 466
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 138
Hin1II CATG 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 2 cut(s) 260, 290
HpaII CCGG 1 cut(s) 138
Hpy188I TCNGA 3 cut(s) 250, 337, 454
Hpy188III TCNNGA 5 cut(s) 35, 225, 278, 512, 547
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 2 cut(s) 32, 553
HpyCH4III ACNGT 6 cut(s) 83, 194, 244, 377, 409, 503
HpyCH4V TGCA 2 cut(s) 371, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
Hsp92II CATG 1 cut(s) 586
Kzo9I GATC 3 cut(s) 26, 280, 472
LguI GCTCTTC 1 cut(s) 575
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 4 cut(s) 24, 151, 189, 504
LweI GCATC 2 cut(s) 97, 648
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 4 cut(s) 194, 238, 342, 358
MalI GATC 3 cut(s) 28, 282, 474
MboI GATC 3 cut(s) 26, 280, 472
MboII GAAGA 4 cut(s) 9, 175, 518, 562
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 2 cut(s) 26, 280
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 3 cut(s) 331, 442, 647
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 6 cut(s) 18, 109, 125, 187, 285, 312
MseI TTAA 4 cut(s) 189, 315, 441, 498
MspI CCGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 647
MvnI CGCG 2 cut(s) 465, 477
MwoI GCNNNNNNNGC 1 cut(s) 474
NdeII GATC 3 cut(s) 26, 280, 472
NlaIII CATG 1 cut(s) 586
NlaIV GGNNCC 3 cut(s) 6, 28, 520
PaeR7I CTCGAG 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 575
PfeI GAWTC 1 cut(s) 290
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 143, 467
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 3 cut(s) 6, 28, 520
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 2 cut(s) 26, 280
PsyI GACNNNGTC 1 cut(s) 263
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 575
SaqAI TTAA 4 cut(s) 189, 315, 441, 498
SatI GCNGC 2 cut(s) 142, 466
Sau3AI GATC 3 cut(s) 26, 280, 472
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 1 cut(s) 211
SfaNI GCATC 2 cut(s) 97, 648
Sfr274I CTCGAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 3 cut(s) 331, 442, 647
SsiI CCGC 4 cut(s) 142, 350, 465, 535
SspMI CTAG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 6 cut(s) 83, 194, 244, 377, 409, 503
TaqI TCGA 5 cut(s) 117, 277, 288, 482, 573
TasI AATT 3 cut(s) 331, 442, 647
TauI GCSGC 2 cut(s) 144, 468
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 4 cut(s) 189, 315, 441, 498
Tru9I TTAA 4 cut(s) 189, 315, 441, 498
TspDTI ATGAA 2 cut(s) 175, 373
TspGWI ACGGA 2 cut(s) 324, 377
Tth111I GACNNNGTC 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 5
XbaI TCTAGA 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 276
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.