Rh2DG190600

Acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000375
Physical Location & Seq
Reverse (-)
17265657 .. 17266028
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG190600.1

Sequence Viewer

Length: 372 bp
ATGAGAGGCATCAAGCTCATCTCAACAAGTACAGTGAGAGCTGCAGCGAGCCATGATATCGAGTTCTCAACTCGAAAAATCGAGTTAACTCCATGGGACCTCCAGCTTCTTCTTGTGGATCCAATCCAGAAGGGTCTACTCTTTCACAAACCTAAAACCTTTTCGCAAAACAACACTCAGCGTCTCAAAACCTCCCTTTCTCGCACCCTCGACTTCTTTCCCCCACTCTCCGGCCGCCTTGCCACTATAAACCACCACGATAACACGACCTTCTTCTTCATTAACTGTAACAATGCTGGGGCTCTTTTCGTCCATTCTAGAGCTGATGGCGTTACAGTCTCCGATATCAATGACACTGTCTATGTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

9.36

Isoelectric Point (pI)

18.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 21 - 119 1e-18 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 235
AclWI GGATC 2 cut(s) 113, 126
AcoI YGGCCR 1 cut(s) 232
AfaI GTAC 2 cut(s) 31, 366
AfiI CCNNNNNNNGG 1 cut(s) 230
AluBI AGCT 4 cut(s) 16, 41, 106, 323
AluI AGCT 4 cut(s) 16, 41, 106, 323
Alw26I GTCTC 2 cut(s) 188, 343
AlwI GGATC 2 cut(s) 113, 126
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 41, 44
AspS9I GGNCC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 97
BamHI GGATCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 28, 56
BccI CCATC 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 188, 343
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 3 cut(s) 42, 45, 235
BlsI GCNGC 3 cut(s) 43, 46, 236
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 98, 120
BmsI GCATC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 191
BseX3I CGGCCG 1 cut(s) 232
BseXI GCAGC 2 cut(s) 28, 56
BseYI CCCAGC 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 188, 343
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 1 cut(s) 235
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 98, 120
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 2 cut(s) 113, 126
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 92
Bst4CI ACNGT 4 cut(s) 34, 287, 337, 358
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 92
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 2 cut(s) 188, 343
BstMBI GATC 1 cut(s) 118
BstMCI CGRYCG 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 28, 56
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BstZI CGGCCG 1 cut(s) 232
BsuRI GGCC 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 39, 354
Cac8I GCNNGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 30, 365
CviAII CATG 2 cut(s) 53, 93
CviJI RGCY 7 cut(s) 16, 41, 51, 106, 234, 302, 323
CviKI_1 RGCY 7 cut(s) 16, 41, 51, 106, 234, 302, 323
CviQI GTAC 2 cut(s) 30, 365
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 232
EagI CGGCCG 1 cut(s) 232
EclXI CGGCCG 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 304
Eco32I GATATC 2 cut(s) 58, 346
Eco47I GGWCC 1 cut(s) 97
Eco52I CGGCCG 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 97
EcoRV GATATC 2 cut(s) 58, 346
EcoT14I CCWWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 2 cut(s) 56, 96
FaiI YATR 4 cut(s) 54, 94, 248, 363
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 52, 92
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 42, 45, 235
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 3 cut(s) 42, 45, 235
FspBI CTAG 1 cut(s) 318
GluI GCNGC 3 cut(s) 42, 45, 235
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 231
HgaI GACGC 1 cut(s) 170
Hin1II CATG 2 cut(s) 56, 96
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HpaI GTTAAC 1 cut(s) 87
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 2 cut(s) 87, 137
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 127, 318
Hpy8I GTNNAC 2 cut(s) 87, 137
HpyAV CCTTC 2 cut(s) 124, 280
HpyCH4III ACNGT 4 cut(s) 34, 287, 337, 358
HpyCH4V TGCA 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 2 cut(s) 56, 96
KspAI GTTAAC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 116, 140, 244, 282
Lsp1109I GCAGC 2 cut(s) 28, 56
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 287, 331
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 3 cut(s) 101, 265, 268
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 304
MnlI CCTC 3 cut(s) 110, 202, 218
MseI TTAA 2 cut(s) 86, 282
MspI CCGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 92
NdeII GATC 1 cut(s) 118
NlaIII CATG 2 cut(s) 56, 96
NlaIV GGNNCC 2 cut(s) 98, 120
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 43, 46, 236
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 98, 120
PspPI GGNCC 1 cut(s) 97
PspPPI RGGWCCY 1 cut(s) 97
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 118
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 2 cut(s) 31, 366
RsaNI GTAC 2 cut(s) 30, 365
SaqAI TTAA 2 cut(s) 86, 282
SatI GCNGC 3 cut(s) 42, 45, 235
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 97
SsiI CCGC 1 cut(s) 235
SspMI CTAG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 4 cut(s) 34, 287, 337, 358
TaqI TCGA 4 cut(s) 60, 73, 81, 210
TatI WGTACW 1 cut(s) 29
TauI GCSGC 1 cut(s) 237
Tru1I TTAA 2 cut(s) 86, 282
Tru9I TTAA 2 cut(s) 86, 282
TscAI CASTG 2 cut(s) 39, 361
TseI GCWGC 2 cut(s) 41, 44
TspDTI ATGAA 1 cut(s) 268
TspRI CASTG 2 cut(s) 39, 361
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.