Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17280359 .. 17281974

Gene Structure 1616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAACTTGGTTCGAAACTATGAAGGGATTTCGAAACCATTGCTTGTGGCGCAAGTCACTGAGCTTGTTGATGGCATCTTTATCGGCTGCAGCATAAGCCACGCAGTTATGGATAGTACCTCTTTCTGGCATTTCTTCAATACTTGGTCTGAAATATCTCGTTTTGGCTCTGATCATGATAAAGTAGCTTCTCAAATTAGTACTAGTAGCACGCCTGTTTTCGGTCGTCAATTTCTTGTTGGCCTAATTGATCTCCCATCCTACATTTCTCTCGAATACAAGGGCGATTCGGCTGCAAGTTGGTCTAGTATTAGTTTGCTGACAAGAAGTTCACCGCGGTTTAATGTGTATGGGAATGATTTCGGGTGGGGGAGACCGCTGGCTGTGCCAAGCGAAGCTGTGGACAAGAGGAGTGGGAAGTTAACGGTGTTTCCTGGCACCAAAGAAGGAAGTGTTGACTTTGAAGTTTACCTTTTGCCGAAGATTCTACAAGCTATGGGGGATGATGCAGAGTTCATGGAAGCCGTGCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

178

Amino Acids

19.6

Weight (kDa)

4.97

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 62	3.2e-14	Transferase family
Transferase	PF02458	106 - 173	9.4e-08	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccII	CGCG	1 cut(s)	337
AciI	CCGC	3 cut(s)	335, 337, 377
AfaI	GTAC	2 cut(s)	118, 202
AfiI	CCNNNNNNNGG	2 cut(s)	126, 221
AgsI	TTSAA	2 cut(s)	139, 464
AhlI	ACTAGT	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	4 cut(s)	64, 188, 398, 494
AluI	AGCT	4 cut(s)	64, 188, 398, 494
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	3 cut(s)	87, 90, 293
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	324
AsuII	TTCGAA	2 cut(s)	13, 32
BanI	GGYRCC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	74, 102, 280
BccI	CCATC	2 cut(s)	65, 265
BceAI	ACGGC	1 cut(s)	509
BcgI	CGANNNNNNTGC	6 cut(s)	22, 56, 64, 98, 275, 309
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	367
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	2 cut(s)	204, 306
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	3 cut(s)	88, 91, 294
BlsI	GCNGC	3 cut(s)	89, 92, 295
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	435
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	2 cut(s)	84, 496
Bpu14I	TTCGAA	2 cut(s)	13, 32
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 221
Bse3DI	GCAATG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	257, 508
BseLI	CCNNNNNNNGG	2 cut(s)	126, 221
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	424
BseXI	GCAGC	3 cut(s)	74, 102, 280
Bsh1236I	CGCG	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	437
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	531
BslI	CCNNNNNNNGG	2 cut(s)	126, 221
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	243
Bso31I	GGTCTC	1 cut(s)	367
Bsp119I	TTCGAA	2 cut(s)	13, 32
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	172, 250
BspACI	CCGC	3 cut(s)	335, 337, 377
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	439
BspMAI	CTGCAG	1 cut(s)	92
BspT104I	TTCGAA	2 cut(s)	13, 32
BspT107I	GGYRCC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	172, 250
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	427
BstBI	TTCGAA	2 cut(s)	13, 32
BstC8I	GCNNGC	2 cut(s)	212, 381
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	257, 508
BstFNI	CGCG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	175, 253
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	172, 250
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 96, 385
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	74, 102, 280
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	257, 508
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	212, 381
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	52
Cfr42I	CCGCGG	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	117, 201
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	3 cut(s)	176, 517, 534
CviQI	GTAC	2 cut(s)	117, 201
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	174, 252
DpnII	GATC	2 cut(s)	172, 250
Eco31I	GGTCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	433
FaeI	CATG	3 cut(s)	179, 520, 537
FaiI	YATR	8 cut(s)	21, 95, 110, 177, 351, 497, 518, 535
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	3 cut(s)	175, 516, 533
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	88, 91, 294
FokI	GGATG	2 cut(s)	244, 515
Fsp4HI	GCNGC	3 cut(s)	88, 91, 294
FspBI	CTAG	2 cut(s)	204, 306
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	88, 91, 294
HaeIII	GGCC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	179, 520, 537
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	2 cut(s)	423, 457
HindII	GTYRAC	2 cut(s)	423, 457
HinfI	GANTC	2 cut(s)	287, 484
HpaI	GTTAAC	1 cut(s)	423
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	5 cut(s)	332, 403, 423, 457, 469
Hpy188I	TCNGA	2 cut(s)	151, 172
Hpy188III	TCNNGA	2 cut(s)	176, 272
Hpy8I	GTNNAC	5 cut(s)	332, 403, 423, 457, 469
HpyAV	CCTTC	2 cut(s)	17, 440
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	3 cut(s)	90, 296, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 96, 385
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	179, 520, 537
HspAI	GCGC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	172
KspAI	GTTAAC	1 cut(s)	423
KspI	CCGCGG	1 cut(s)	338
Kzo9I	GATC	2 cut(s)	172, 250
LpnPI	CCDG	5 cut(s)	112, 228, 365, 420, 447
Lsp1109I	GCAGC	3 cut(s)	74, 102, 280
LweI	GCATC	2 cut(s)	84, 496
MaeI	CTAG	2 cut(s)	204, 306
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	174, 252
MboI	GATC	2 cut(s)	172, 250
MboII	GAAGA	2 cut(s)	127, 493
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	3 cut(s)	195, 230, 246
MnlI	CCTC	2 cut(s)	130, 402
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	2 cut(s)	342, 422
MspA1I	CMGCKG	2 cut(s)	337, 379
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	49, 96, 385
NdeII	GATC	2 cut(s)	172, 250
NlaIII	CATG	3 cut(s)	179, 520, 537
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	2 cut(s)	13, 32
PagI	TCATGA	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	287, 484
PkrI	GCNGC	3 cut(s)	89, 92, 295
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	92
RsaI	GTAC	2 cut(s)	118, 202
RsaNI	GTAC	2 cut(s)	117, 201
SacII	CCGCGG	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	342, 422
SatI	GCNGC	3 cut(s)	88, 91, 294
Sau3AI	GATC	2 cut(s)	172, 250
ScaI	AGTACT	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	6 cut(s)	66, 122, 190, 400, 474, 496
SfaNI	GCATC	2 cut(s)	84, 496
SfcI	CTRYAG	1 cut(s)	88
Sfr303I	CCGCGG	1 cut(s)	338
SfuI	TTCGAA	2 cut(s)	13, 32
SgrBI	CCGCGG	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	3 cut(s)	195, 230, 246
SsiI	CCGC	3 cut(s)	335, 337, 377
SspMI	CTAG	2 cut(s)	204, 306
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	13, 32, 273
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	3 cut(s)	195, 230, 246
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	287, 484
Tru1I	TTAA	2 cut(s)	342, 422
Tru9I	TTAA	2 cut(s)	342, 422
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	87, 90, 293
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	17, 36, 505
TspRI	CASTG	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	204, 306
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.