Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

15406424 .. 15407050

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1175300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGCACCAATAACATTTCATCCCTTCAAGCACTCATGGCCCATCACTGGCGAGCAATAACTCGTTGTGGACATCTCAACCCTGATCAGGTGATCAGTTATCGGGTTGCAGTAGGATTGAGGCAAAAATTGAAGCCACCATTGCCAAAGGAGTGCCTCGGAAATGCACTTCAGGGAGTTTCTGTGAAGTCCACGGCATGTGAGCTTTTACAACACGGACTAGGCTGGGCGGCTTTGCATATAAACAAGACCATTGCTTCCCTGACAGCAGAGGAAGTGAAGAAGACATTGAAGGATTGGGTAAACGCCCCTCTAATACTTTCAAATATGAGGAGTAATATTCCAACAAGTACTAGTACCGTTTCATTGCTCATAGGAAGCTCACCACAGTTCAATGTGTATGGTAACGACTTTGGGTTGGGGAGACCGGTTGCTGTGCGAAGCGGAGCTGCTAACAAAATGAACGGGAAAATAGCAGTTTTTCCTGGGGCCGAAGAAGGAAGTATTGATTTTGAAGTTTGCCTTTTGCCTGAGACTCTACATGCTATGGCAGAAGATGCAGAGTTCATGGAGGCTGTGGCCACATGTACTAAACCCTGCATATATGAAAGCTGTCTTGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

209

Amino Acids

22.34

Weight (kDa)

6.99

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 190	8.3e-33	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AciI	CCGC	2 cut(s)	230, 444
AcoI	YGGCCR	1 cut(s)	579
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	3 cut(s)	352, 358, 589
AfiI	CCNNNNNNNGG	2 cut(s)	48, 88
AflIII	ACRYGT	1 cut(s)	584
AgeI	ACCGGT	1 cut(s)	427
AgsI	TTSAA	6 cut(s)	29, 133, 292, 324, 394, 515
AhlI	ACTAGT	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	4 cut(s)	205, 381, 449, 612
AluI	AGCT	4 cut(s)	205, 381, 449, 612
Alw26I	GTCTC	2 cut(s)	418, 527
AoxI	GGCC	3 cut(s)	39, 489, 579
ApeKI	GCWGC	1 cut(s)	449
AsiGI	ACCGGT	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	40, 489
AsuHPI	GGTGA	2 cut(s)	103, 375
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	2 cut(s)	85, 93
BcoDI	GTCTC	2 cut(s)	418, 527
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	2 cut(s)	221, 354
BisI	GCNGC	2 cut(s)	231, 450
BlsI	GCNGC	2 cut(s)	232, 451
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	486
BmgT120I	GGNCC	2 cut(s)	40, 489
BmiI	GGNNCC	2 cut(s)	7, 490
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	3 cut(s)	157, 192, 485
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 88
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	3 cut(s)	140, 252, 365
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	3 cut(s)	157, 192, 485
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	48, 88
BseMI	GCAATG	3 cut(s)	140, 252, 365
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	225
BshFI	GGCC	3 cut(s)	41, 491, 581
BshNI	GGYRCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	48, 88
BsmAI	GTCTC	2 cut(s)	418, 527
BsnI	GGCC	3 cut(s)	41, 491, 581
Bso31I	GGTCTC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	85, 93
BspACI	CCGC	2 cut(s)	230, 444
BspANI	GGCC	3 cut(s)	41, 491, 581
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	7, 490
BspT107I	GGYRCC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	3 cut(s)	140, 252, 365
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	3 cut(s)	157, 192, 485
BssMI	GATC	2 cut(s)	85, 93
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	361, 390
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	531
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	88, 96
BstMAI	GTCTC	2 cut(s)	418, 527
BstMBI	GATC	2 cut(s)	85, 93
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 142, 557
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	3 cut(s)	201, 545, 588
BstSCI	CCNGG	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	41, 491, 581
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	40, 489
Csp6I	GTAC	3 cut(s)	351, 357, 588
CspAI	ACCGGT	1 cut(s)	427
CviAII	CATG	5 cut(s)	37, 198, 542, 568, 585
CviQI	GTAC	3 cut(s)	351, 357, 588
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	2 cut(s)	87, 95
DpnII	GATC	2 cut(s)	85, 93
EaeI	YGGCCR	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	484
FaeI	CATG	5 cut(s)	40, 201, 545, 571, 588
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FatI	CATG	5 cut(s)	36, 197, 541, 567, 584
FbaI	TGATCA	2 cut(s)	85, 93
Fnu4HI	GCNGC	2 cut(s)	231, 450
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	2 cut(s)	231, 450
FspBI	CTAG	2 cut(s)	221, 354
GluI	GCNGC	2 cut(s)	231, 450
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	41, 491, 581
HapII	CCGG	1 cut(s)	428
Hin1II	CATG	5 cut(s)	40, 201, 545, 571, 588
HinfI	GANTC	1 cut(s)	535
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	103, 375
Hpy166II	GTNNAC	3 cut(s)	71, 192, 304
Hpy188I	TCNGA	1 cut(s)	161
Hpy8I	GTNNAC	3 cut(s)	71, 192, 304
HpyAV	CCTTC	3 cut(s)	35, 286, 491
HpyCH4III	ACNGT	2 cut(s)	361, 390
HpyCH4V	TGCA	6 cut(s)	110, 167, 238, 560, 600, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 142, 557
HpyF3I	CTNAG	1 cut(s)	531
Hsp92II	CATG	5 cut(s)	40, 201, 545, 571, 588
Ksp22I	TGATCA	2 cut(s)	85, 93
Kzo9I	GATC	2 cut(s)	85, 93
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	221, 354
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	87, 95
MboI	GATC	2 cut(s)	85, 93
MboII	GAAGA	4 cut(s)	292, 295, 506, 566
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	6 cut(s)	114, 167, 265, 321, 324, 565
Mox20I	TGGCCA	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	1 cut(s)	625
Msp20I	TGGCCA	1 cut(s)	581
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	38, 142, 557
NdeII	GATC	2 cut(s)	85, 93
NlaIII	CATG	5 cut(s)	40, 201, 545, 571, 588
NlaIV	GGNNCC	2 cut(s)	7, 490
NspI	RCATGY	3 cut(s)	201, 545, 588
PciI	ACATGT	1 cut(s)	584
PinAI	ACCGGT	1 cut(s)	427
PkrI	GCNGC	2 cut(s)	232, 451
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PscI	ACATGT	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	7, 490
PspPI	GGNCC	2 cut(s)	40, 489
RsaI	GTAC	3 cut(s)	352, 358, 589
RsaNI	GTAC	3 cut(s)	351, 357, 588
SaqAI	TTAA	1 cut(s)	625
SatI	GCNGC	2 cut(s)	231, 450
Sau3AI	GATC	2 cut(s)	85, 93
Sau96I	GGNCC	2 cut(s)	40, 489
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	93, 207, 383, 451, 614
SfaNI	GCATC	1 cut(s)	547
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	2 cut(s)	230, 444
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	221, 354
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	361, 390
TasI	AATT	1 cut(s)	128
TatI	WGTACW	2 cut(s)	350, 587
TauI	GCSGC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	625
Tru9I	TTAA	1 cut(s)	625
TscAI	CASTG	1 cut(s)	53
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	5 cut(s)	9, 354, 476, 556, 621
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	53
XceI	RCATGY	3 cut(s)	201, 545, 588
XspI	CTAG	2 cut(s)	221, 354
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.