Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17561970 .. 17562269

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG188100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTCTCAAATTCGGCAAATCTCTACTAGTATCGATTGTCCAACTTGTGAGAATGATGAGTTAACTCATAGAGTCGAGTTAAGTCCATGGGATCTTCAACTCCTTAAACTTGAGTACATCCAAAAAGGGTTTCTCTTCCCAAAGCTAGCAGAGAAAGAAGTAGACCAGAGCTTGATACAACACCTAAAAGTTTCCCTTTCTCACACTTTGAATATCTTGTACCCACTAGCAGGTCGCTTATCCCAGATTGAAAACGAAGATGGCACCACTTGCTTTTTCATCAACTGTAACAACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

99

Amino Acids

11.35

Weight (kDa)

5.0

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	22 - 99	9.5e-12	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	162
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	9
AfaI	GTAC	2 cut(s)	116, 221
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	98, 211, 251
AhlI	ACTAGT	1 cut(s)	26
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	2 cut(s)	145, 171
AluI	AGCT	2 cut(s)	145, 171
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	9
AsuNHI	GCTAGC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	263
BccI	CCATC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	3 cut(s)	27, 146, 227
BfuAI	ACCTGC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	265
BmtI	GCTAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	86
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	221
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	147
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	115, 220
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	2 cut(s)	145, 171
CviKI_1	RGCY	2 cut(s)	145, 171
CviQI	GTAC	2 cut(s)	115, 220
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	90
FaiI	YATR	2 cut(s)	69, 88
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	162
FokI	GGATG	1 cut(s)	104
FspBI	CTAG	3 cut(s)	27, 146, 227
Hin1II	CATG	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	72
HpaI	GTTAAC	1 cut(s)	63
Hpy166II	GTNNAC	2 cut(s)	63, 163
Hpy8I	GTNNAC	2 cut(s)	63, 163
HpyCH4III	ACNGT	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	90
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	3 cut(s)	179, 216, 257
MaeI	CTAG	3 cut(s)	27, 146, 227
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	86, 127, 269
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	65
MseI	TTAA	3 cut(s)	62, 80, 105
MwoI	GCNNNNNNNGC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	86
NdeII	GATC	1 cut(s)	91
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	2 cut(s)	116, 221
RsaNI	GTAC	2 cut(s)	115, 220
SaqAI	TTAA	3 cut(s)	62, 80, 105
Sau3AI	GATC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	81
SetI	ASST	4 cut(s)	147, 173, 186, 235
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	26
Sse9I	AATT	1 cut(s)	9
SspMI	CTAG	3 cut(s)	27, 146, 227
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	2 cut(s)	33, 75
TasI	AATT	1 cut(s)	9
TatI	WGTACW	1 cut(s)	114
Tru1I	TTAA	3 cut(s)	62, 80, 105
Tru9I	TTAA	3 cut(s)	62, 80, 105
TspDTI	ATGAA	1 cut(s)	268
XapI	RAATTY	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	3 cut(s)	27, 146, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.