Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17540845 .. 17541369

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG193700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCTCAAATTCGGCAAATCTCTACTAGTATCGATTGTCCAACTTGTGAGAATGATGAGTTAACTCATAGAGTCGAGTTAAGTCCATGGGATCTTCAACTCCTTAAACTTGAGTACATCCAAAAAGGGTTTCTCTTCCCAAAGCTAGGAGAGAAAGAAGTAGACCAGAGCTTGATACAACACCTAAAAGTTTCCCTTTCTCACACTTTGAATATCTTGTACCCACTAGCAGGTCGCTTATCCCAGATTGAAAACGAAGATGGCACCACTTGCTTTTTCATCAACTGTAACAGCGCCCGAGCCCAATTTGTTCATGCAGCTTATGATGGTGTCAGATTGGTTGATATTCTTGACCCTGTTTACATTCCTGGTGACATTATCGAAAACCTATTTTCTATGAATTCAGTTCTGAACTATGAAGGCACTTCAAAACCATTGCTTGCAGTGCAAATCACTGAGCTTGCGGATGGCATATTTATAGGTTGCAGCATAAACCATGTGGTTGCATATGGCACCTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

174

Amino Acids

19.46

Weight (kDa)

4.76

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	22 - 174	5.2e-29	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	221
AccB1I	GGYRCC	2 cut(s)	263, 512
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	9, 400
AfaI	GTAC	2 cut(s)	116, 221
AfiI	CCNNNNNNNGG	2 cut(s)	146, 230
AgsI	TTSAA	4 cut(s)	98, 211, 251, 429
AhlI	ACTAGT	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	4 cut(s)	145, 171, 320, 460
AluI	AGCT	4 cut(s)	145, 171, 320, 460
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	99
Ama87I	CYCGRG	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	317, 486
ApoI	RAATTY	2 cut(s)	9, 400
AspLEI	GCGC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	297
BanI	GGYRCC	2 cut(s)	263, 512
BanII	GRGCYC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	329, 498
BccI	CCATC	3 cut(s)	254, 320, 461
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	4 cut(s)	27, 146, 227, 523
BfoI	RGCGCY	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	318, 487
BlsI	GCNGC	2 cut(s)	319, 488
Bme1390I	CCNGG	1 cut(s)	369
BmeT110I	CYCGRG	1 cut(s)	297
BmiI	GGNNCC	2 cut(s)	265, 514
BmrFI	CCNGG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 230
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	117, 472
BseLI	CCNNNNNNNGG	2 cut(s)	146, 230
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	329, 498
BshNI	GGYRCC	2 cut(s)	263, 512
BshVI	ATCGAT	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	146, 230
BsmAI	GTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	86
BspACI	CCGC	1 cut(s)	464
BspCNI	CTCAG	1 cut(s)	448
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	265, 514
BspMI	ACCTGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	99
BspT107I	GGYRCC	2 cut(s)	263, 512
BsrDI	GCAATG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	441, 462
BstDEI	CTNAG	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	117, 472
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 445
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstV1I	GCAGC	2 cut(s)	329, 498
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	117, 472
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	450, 453
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	441, 462
CfoI	GCGC	1 cut(s)	296
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	115, 220
CviAII	CATG	3 cut(s)	87, 314, 497
CviJI	RGCY	5 cut(s)	145, 171, 302, 320, 460
CviKI_1	RGCY	5 cut(s)	145, 171, 302, 320, 460
CviQI	GTAC	2 cut(s)	115, 220
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	3 cut(s)	90, 317, 500
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	3 cut(s)	86, 313, 496
FauNDI	CATATG	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	318, 487
FokI	GGATG	2 cut(s)	104, 479
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	2 cut(s)	318, 487
FspBI	CTAG	4 cut(s)	27, 146, 227, 523
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	318, 487
HaeII	RGCGCY	1 cut(s)	297
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	90, 317, 500
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	72
HpaI	GTTAAC	1 cut(s)	63
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	3 cut(s)	63, 163, 361
Hpy188I	TCNGA	2 cut(s)	335, 411
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	3 cut(s)	63, 163, 361
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	5 cut(s)	317, 443, 448, 486, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 445
HpyF3I	CTNAG	1 cut(s)	456
Hsp92II	CATG	3 cut(s)	90, 317, 500
HspAI	GCGC	1 cut(s)	294
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	6 cut(s)	179, 216, 257, 354, 369, 381
Lsp1109I	GCAGC	2 cut(s)	329, 498
MaeI	CTAG	4 cut(s)	27, 146, 227, 523
MaeIII	GTNAC	2 cut(s)	287, 371
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	86, 127, 269
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	3 cut(s)	9, 305, 400
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	65
MseI	TTAA	3 cut(s)	62, 80, 105
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	270, 445
NcoI	CCATGG	1 cut(s)	86
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	90, 317, 500
NlaIV	GGNNCC	2 cut(s)	265, 514
NmuCI	GTSAC	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	319, 488
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	265, 514
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	2 cut(s)	116, 221
RsaNI	GTAC	2 cut(s)	115, 220
SaqAI	TTAA	3 cut(s)	62, 80, 105
SatI	GCNGC	2 cut(s)	318, 487
Sau3AI	GATC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	9 cut(s)	147, 173, 186, 235, 322, 390, 462, 484, 518
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	26
Sse9I	AATT	3 cut(s)	9, 305, 400
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	4 cut(s)	27, 146, 227, 523
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	3 cut(s)	33, 75, 381
TasI	AATT	3 cut(s)	9, 305, 400
TatI	WGTACW	1 cut(s)	114
Tru1I	TTAA	3 cut(s)	62, 80, 105
Tru9I	TTAA	3 cut(s)	62, 80, 105
TscAI	CASTG	2 cut(s)	450, 460
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	317, 486
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	4 cut(s)	268, 302, 413, 432
TspRI	CASTG	2 cut(s)	450, 460
XapI	RAATTY	2 cut(s)	9, 400
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	4 cut(s)	27, 146, 227, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.