Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014348.1

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Forward (+)

21582 .. 22526

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014348.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgatggggcccaaccgagacatacaccttgtagcccggtgtccaagctatgcctcgatattcggaagcagtcgatacctcgccagaaagccacttttccggccttgccaagttgcctccatagtaggcctttatgcactagaatataggactgaggcagagaatggatccaccactgtcgaaataatactctgggaatgcgcgtcttggaatccctgtgaagtccactgcagcggatctgctacactgcacactaggttaggcggcattgcagctgataaggctattgcttccattactgctaaagaaaccaagaagtacctagaagattggtctagtactagtttgctgacaagaagttcaccgcggttcaatgtgtatgagaatgatttcgggtgggggagaccgctggctgtgcgaagaaaagctacggacaagaggagtgggaagttaacggtgtttcctggcaccaaagaaggaagtgttgactttgaagtttgccttttgcaggagattctacaagctatgggggatgatgtagagttcatagaagtcgtgctcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

188

Amino Acids

20.86

Weight (kDa)

6.82

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	467
AccII	CGCG	2 cut(s)	203, 367
AciI	CCGC	5 cut(s)	234, 264, 365, 367, 407
AclWI	GGATC	3 cut(s)	162, 175, 244
AfaI	GTAC	2 cut(s)	320, 340
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgsI	TTSAA	2 cut(s)	373, 494
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	4 cut(s)	48, 275, 428, 524
AluI	AGCT	4 cut(s)	48, 275, 428, 524
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	12, 397
AlwI	GGATC	3 cut(s)	162, 175, 244
AoxI	GGCC	3 cut(s)	8, 101, 127
ApaI	GGGCCC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	231, 272
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	8, 9
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	12
BarI	GAAGNNNNNNTAC	2 cut(s)	412, 444
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	243, 284
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	12, 397
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	5 cut(s)	140, 255, 323, 336, 342
BfmI	CTRYAG	1 cut(s)	229
BisI	GCNGC	3 cut(s)	232, 265, 273
BlsI	GCNGC	3 cut(s)	233, 266, 274
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	37, 465
BmgT120I	GGNCC	2 cut(s)	8, 9
BmiI	GGNNCC	4 cut(s)	9, 10, 169, 469
BmrFI	CCNGG	2 cut(s)	37, 465
BpuMI	CCSGG	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	454
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	243, 284
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	2 cut(s)	203, 367
BshFI	GGCC	3 cut(s)	10, 103, 129
BshNI	GGYRCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	37, 100
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	12, 397
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	3 cut(s)	10, 103, 129
Bso31I	GGTCTC	1 cut(s)	397
Bsp120I	GGGCCC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	12, 561
Bsp143I	GATC	2 cut(s)	167, 236
BspACI	CCGC	5 cut(s)	234, 264, 365, 367, 407
BspANI	GGCC	3 cut(s)	10, 103, 129
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	2 cut(s)	203, 367
BspLI	GGNNCC	4 cut(s)	9, 10, 169, 469
BspMAI	CTGCAG	1 cut(s)	233
BspPI	GGATC	3 cut(s)	162, 175, 244
BspT107I	GGYRCC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	2 cut(s)	167, 236
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	178, 457
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	365
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	2 cut(s)	203, 367
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	170, 239
BstMAI	GTCTC	2 cut(s)	12, 397
BstMBI	GATC	2 cut(s)	167, 236
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 415
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	2 cut(s)	35, 463
BstSFI	CTRYAG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	2 cut(s)	203, 367
BstV1I	GCAGC	2 cut(s)	243, 284
BstX2I	RGATCY	2 cut(s)	167, 236
BstYI	RGATCY	2 cut(s)	167, 236
BsuRI	GGCC	3 cut(s)	10, 103, 129
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	2 cut(s)	226, 245
BtsIMutI	CAGTG	3 cut(s)	174, 226, 245
Cac8I	GCNNGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	8, 9
Cfr42I	CCGCGG	1 cut(s)	368
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	319, 339
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	1 cut(s)	564
CviQI	GTAC	2 cut(s)	319, 339
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	169, 238
DpnII	GATC	2 cut(s)	167, 236
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	1 cut(s)	567
FaiI	YATR	9 cut(s)	23, 51, 122, 135, 147, 381, 527, 548, 565
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FatI	CATG	1 cut(s)	563
Fnu4HI	GCNGC	3 cut(s)	232, 265, 273
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	3 cut(s)	232, 265, 273
FspBI	CTAG	5 cut(s)	140, 255, 323, 336, 342
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	3 cut(s)	232, 265, 273
HaeIII	GGCC	3 cut(s)	10, 103, 129
HapII	CCGG	2 cut(s)	37, 100
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	567
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	2 cut(s)	453, 487
HindII	GTYRAC	2 cut(s)	453, 487
HinfI	GANTC	2 cut(s)	211, 514
HpaI	GTTAAC	1 cut(s)	453
HpaII	CCGG	2 cut(s)	37, 100
HphI	GGTGA	1 cut(s)	354
Hpy166II	GTNNAC	4 cut(s)	226, 362, 453, 487
Hpy188I	TCNGA	1 cut(s)	65
Hpy8I	GTNNAC	4 cut(s)	226, 362, 453, 487
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	2 cut(s)	178, 457
HpyCH4V	TGCA	5 cut(s)	137, 231, 250, 272, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 415
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	567
HspAI	GCGC	1 cut(s)	201
KspAI	GTTAAC	1 cut(s)	453
KspI	CCGCGG	1 cut(s)	368
Kzo9I	GATC	2 cut(s)	167, 236
LpnPI	CCDG	9 cut(s)	50, 97, 113, 178, 229, 395, 450, 477, 494
Lsp1109I	GCAGC	2 cut(s)	243, 284
MaeI	CTAG	5 cut(s)	140, 255, 323, 336, 342
MalI	GATC	2 cut(s)	169, 238
MboI	GATC	2 cut(s)	167, 236
MboII	GAAGA	2 cut(s)	338, 432
MflI	RGATCY	2 cut(s)	167, 236
MhlI	GDGCHC	2 cut(s)	12, 561
MnlI	CCTC	5 cut(s)	64, 89, 127, 148, 432
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	1 cut(s)	452
MspA1I	CMGCKG	4 cut(s)	234, 275, 367, 409
MspI	CCGG	2 cut(s)	37, 100
MspR9I	CCNGG	2 cut(s)	37, 465
Mva1269I	GAATGC	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	2 cut(s)	203, 367
MwoI	GCNNNNNNNGC	2 cut(s)	281, 415
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	2 cut(s)	167, 236
NlaIII	CATG	1 cut(s)	567
NlaIV	GGNNCC	4 cut(s)	9, 10, 169, 469
PceI	AGGCCT	1 cut(s)	129
PctI	GAATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	211, 514
PkrI	GCNGC	3 cut(s)	233, 266, 274
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	4 cut(s)	9, 10, 169, 469
PspOMI	GGGCCC	1 cut(s)	8
PspPI	GGNCC	2 cut(s)	8, 9
PstI	CTGCAG	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	167, 236
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	320, 340
RsaNI	GTAC	2 cut(s)	319, 339
SacII	CCGCGG	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	3 cut(s)	232, 265, 273
Sau3AI	GATC	2 cut(s)	167, 236
Sau96I	GGNCC	2 cut(s)	8, 9
ScaI	AGTACT	1 cut(s)	340
ScrFI	CCNGG	2 cut(s)	37, 465
SduI	GDGCHC	2 cut(s)	12, 561
SetI	ASST	8 cut(s)	30, 50, 81, 260, 277, 324, 430, 526
SfcI	CTRYAG	1 cut(s)	229
Sfr303I	CCGCGG	1 cut(s)	368
SgrBI	CCGCGG	1 cut(s)	368
SpeI	ACTAGT	1 cut(s)	341
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	5 cut(s)	234, 264, 365, 367, 407
SspMI	CTAG	5 cut(s)	140, 255, 323, 336, 342
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	35, 463
TaaI	ACNGT	2 cut(s)	178, 457
TaqI	TCGA	3 cut(s)	56, 73, 180
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	211, 514
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	3 cut(s)	181, 233, 252
TseI	GCWGC	2 cut(s)	231, 272
TspDTI	ATGAA	1 cut(s)	535
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	3 cut(s)	181, 233, 252
XagI	CCTNNNNNAGG	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	5 cut(s)	140, 255, 323, 336, 342
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.