Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

26087744 .. 26088718

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1286000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGATGGATGCTTGGAACTACGAGGGTATTACAAAACCATTGGTCGCAGTACAAGTCACTGAACTTGTTGACGGCATCTTTATTGGTTGCAGTATAAACCATGTGGTCGTTGATGGTACCTCTTTCTGGCATTTCTTCAATACGTGGTCTGAAATTTCCCGTGTAGGACCTTCTGGTAAAATTTCTCAACCTCGTCCTGTTTTCGCTCGTGAATTTTATGACGGCGTGATCGATCTTCCAATTCAGCTACCCTTCTCCAACATTCAAGAAATCATGACCAAGAAGCCTCTAATTGGACATGGATTATCGTCTTCGAATTCTTCACAGCGGGTAGTATTTCATTTTCGTAAAGAGAAAGTGGTAGAGCTCAAGTCCAAGGCTAATGTTGAGATGGGCACCACCGACAATAACACGATCTCATCCCTTCAAGCACTCATGGCTCATCTTTGGCGAGCGGTAACGCGTGCCAGAAATCTGAACCCAGATCAAGAAGTTAGCTACCGAATTGCAGTGGGAGTGCGGCAGAGAATGGAGCCACCATTGCCAAAAGAGTACATCGGGAATGGGGCTCTGGGCCTTATTGTGAAGTGCACCGCTGGGGAGCTAATACGACATGGACTAGGGTGGGCAGCCTTCCTAATAAACAAAAAAATTGGTTCGCTGAAGGCTGAAGAAGCTAGGAAGTACATGGAGGATTGGGTAAAAGCTCCTACGTTTCTTTCAAATCCACAAAGGGATACAGCAACTCTTGATTTGCTCACAGGAAGCTCGCCGCGGTTCAATGTGTATGGTAATGATTTTGGGTGGGGAAGGCCGGTTGCTGTGCGAAGCAGAACTCAAGAAAGAAAGGTTGGGAAGTTAACGGTGTTTCCTGGGCCTGAAGAAGGTAGCATCGATTTTGAATGTTGCCTTTGGCCAGAGACTATACGAGCTATGGCAGAAGATGTAGAGTTCATGCAAGCTATGCTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

325

Amino Acids

36.32

Weight (kDa)

8.28

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 319	1.4e-58	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	2 cut(s)	116, 395
AccBSI	CCGCTC	1 cut(s)	455
AccII	CGCG	2 cut(s)	463, 775
AciI	CCGC	6 cut(s)	328, 455, 520, 594, 773, 775
AcoI	YGGCCR	1 cut(s)	914
AcsI	RAATTY	4 cut(s)	153, 180, 212, 316
AcuI	CTGAAG	3 cut(s)	683, 690, 900
AfaI	GTAC	4 cut(s)	51, 118, 554, 686
AfiI	CCNNNNNNNGG	3 cut(s)	126, 293, 884
AflIII	ACRYGT	1 cut(s)	461
AgsI	TTSAA	6 cut(s)	139, 266, 428, 723, 781, 902
AjnI	CCWGG	1 cut(s)	871
AjuI	GAANNNNNNNTTGG	2 cut(s)	834, 866
AluBI	AGCT	9 cut(s)	247, 367, 498, 604, 677, 707, 768, 932, 962
AluI	AGCT	9 cut(s)	247, 367, 498, 604, 677, 707, 768, 932, 962
Alw21I	GWGCWC	2 cut(s)	369, 593
Alw26I	GTCTC	1 cut(s)	914
Alw44I	GTGCAC	1 cut(s)	589
AoxI	GGCC	4 cut(s)	574, 812, 875, 914
ApaLI	GTGCAC	1 cut(s)	589
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	4 cut(s)	153, 180, 212, 316
Asp718I	GGTACC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	167, 574, 875
AsuII	TTCGAA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	2 cut(s)	398, 593
BalI	TGGCCA	1 cut(s)	916
BanI	GGYRCC	2 cut(s)	116, 395
BanII	GRGCYC	2 cut(s)	369, 571
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	369, 593
BbvI	GCAGC	1 cut(s)	641
BccI	CCATC	2 cut(s)	107, 385
BceAI	ACGGC	2 cut(s)	88, 238
BciT130I	CCWGG	1 cut(s)	873
BciVI	GTATCC	1 cut(s)	730
BcoDI	GTCTC	1 cut(s)	914
BfaI	CTAG	2 cut(s)	620, 678
BfuI	GTATCC	1 cut(s)	730
BisI	GCNGC	3 cut(s)	521, 630, 773
BlsI	GCNGC	3 cut(s)	522, 631, 774
Bme1390I	CCNGG	1 cut(s)	873
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	3 cut(s)	167, 574, 875
BmiI	GGNNCC	3 cut(s)	118, 397, 534
BmrFI	CCNGG	1 cut(s)	873
BmsI	GCATC	2 cut(s)	84, 900
BpiI	GAAGAC	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	353, 822
Bsa29I	ATCGAT	2 cut(s)	231, 894
BsaAI	YACGTR	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	375, 773, 872
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 293, 884
Bse118I	RCCGGY	1 cut(s)	814
Bse3DI	GCAATG	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	873
BseCI	ATCGAT	2 cut(s)	231, 894
BseDI	CCNNGG	3 cut(s)	375, 773, 872
BseGI	GGATG	2 cut(s)	13, 419
BseLI	CCNNNNNNNGG	3 cut(s)	126, 293, 884
BseMI	GCAATG	1 cut(s)	539
BseSI	GKGCMC	2 cut(s)	398, 593
BseXI	GCAGC	1 cut(s)	641
BseYI	CCCAGC	1 cut(s)	596
Bsh1236I	CGCG	2 cut(s)	463, 775
BshFI	GGCC	4 cut(s)	576, 814, 877, 916
BshNI	GGYRCC	2 cut(s)	116, 395
BshVI	ATCGAT	2 cut(s)	231, 894
BsiHKAI	GWGCWC	2 cut(s)	369, 593
BsiSI	CCGG	1 cut(s)	815
BslI	CCNNNNNNNGG	3 cut(s)	126, 293, 884
BsmAI	GTCTC	1 cut(s)	914
BsnI	GGCC	4 cut(s)	576, 814, 877, 916
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	4 cut(s)	369, 398, 571, 593
Bsp143I	GATC	4 cut(s)	228, 232, 414, 484
BspACI	CCGC	6 cut(s)	328, 455, 520, 594, 773, 775
BspANI	GGCC	4 cut(s)	576, 814, 877, 916
BspDI	ATCGAT	2 cut(s)	231, 894
BspFNI	CGCG	2 cut(s)	463, 775
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	118, 397, 534
BspT104I	TTCGAA	1 cut(s)	314
BspT107I	GGYRCC	2 cut(s)	116, 395
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	539
BsrFI	RCCGGY	1 cut(s)	814
BssAI	RCCGGY	1 cut(s)	814
BssECI	CCNNGG	3 cut(s)	375, 773, 872
BssMI	GATC	4 cut(s)	228, 232, 414, 484
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	1 cut(s)	865
BstAPI	GCANNNNNTGC	1 cut(s)	964
BstBAI	YACGTR	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	453, 465, 770, 960
BstDSI	CCRYGG	1 cut(s)	773
BstENI	CCTNNNNNAGG	1 cut(s)	882
BstF5I	GGATG	2 cut(s)	13, 419
BstFNI	CGCG	2 cut(s)	463, 775
BstKTI	GATC	4 cut(s)	231, 235, 417, 487
BstMAI	GTCTC	1 cut(s)	914
BstMBI	GATC	4 cut(s)	228, 232, 414, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	437, 541, 674, 964
BstNI	CCWGG	1 cut(s)	873
BstSCI	CCNGG	1 cut(s)	871
BstSLI	GKGCMC	2 cut(s)	398, 593
BstUI	CGCG	2 cut(s)	463, 775
BstV1I	GCAGC	1 cut(s)	641
BstV2I	GAAGAC	1 cut(s)	303
Bsu15I	ATCGAT	2 cut(s)	231, 894
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	4 cut(s)	576, 814, 877, 916
BsuTUI	ATCGAT	2 cut(s)	231, 894
BtgI	CCRYGG	1 cut(s)	773
BtsCI	GGATG	2 cut(s)	13, 419
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	57, 516
Cac8I	GCNNGC	4 cut(s)	453, 465, 770, 960
CciI	TCATGA	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	814
Cfr13I	GGNCC	3 cut(s)	167, 574, 875
Cfr42I	CCGCGG	1 cut(s)	776
ClaI	ATCGAT	2 cut(s)	231, 894
Csp6I	GTAC	4 cut(s)	50, 117, 553, 685
CviAII	CATG	7 cut(s)	101, 274, 299, 436, 614, 688, 955
CviQI	GTAC	4 cut(s)	50, 117, 553, 685
DpnI	GATC	4 cut(s)	230, 234, 416, 486
DpnII	GATC	4 cut(s)	228, 232, 414, 484
EaeI	YGGCCR	1 cut(s)	914
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	2 cut(s)	369, 571
Eco47I	GGWCC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	3 cut(s)	683, 690, 900
EcoICRI	GAGCTC	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	882
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	2 cut(s)	369, 571
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	7 cut(s)	104, 277, 302, 439, 617, 691, 958
FatI	CATG	7 cut(s)	100, 273, 298, 435, 613, 687, 954
FauI	CCCGC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	521, 630, 773
FokI	GGATG	2 cut(s)	20, 406
FriOI	GRGCYC	2 cut(s)	369, 571
Fsp4HI	GCNGC	3 cut(s)	521, 630, 773
FspBI	CTAG	2 cut(s)	620, 678
GluI	GCNGC	3 cut(s)	521, 630, 773
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	4 cut(s)	576, 814, 877, 916
HapII	CCGG	1 cut(s)	815
Hin1II	CATG	7 cut(s)	104, 277, 302, 439, 617, 691, 958
HincII	GTYRAC	2 cut(s)	70, 861
HindII	GTYRAC	2 cut(s)	70, 861
HpaI	GTTAAC	1 cut(s)	861
HpaII	CCGG	1 cut(s)	815
Hpy166II	GTNNAC	3 cut(s)	70, 591, 861
Hpy188I	TCNGA	2 cut(s)	151, 477
Hpy188III	TCNNGA	7 cut(s)	209, 266, 274, 488, 559, 749, 839
Hpy8I	GTNNAC	3 cut(s)	70, 591, 861
HpyAV	CCTTC	7 cut(s)	180, 262, 434, 643, 658, 804, 878
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4IV	ACGT	2 cut(s)	143, 713
HpyCH4V	TGCA	4 cut(s)	90, 509, 591, 958
HpyF10VI	GCNNNNNNNGC	4 cut(s)	437, 541, 674, 964
HpySE526I	ACGT	2 cut(s)	143, 713
Hsp92II	CATG	7 cut(s)	104, 277, 302, 439, 617, 691, 958
KpnI	GGTACC	1 cut(s)	120
KspAI	GTTAAC	1 cut(s)	861
KspI	CCGCGG	1 cut(s)	776
Kzo9I	GATC	4 cut(s)	228, 232, 414, 484
LmnI	GCTCC	3 cut(s)	532, 601, 712
Lsp1109I	GCAGC	1 cut(s)	641
LweI	GCATC	2 cut(s)	84, 900
MaeI	CTAG	2 cut(s)	620, 678
MaeII	ACGT	2 cut(s)	143, 713
MaeIII	GTNAC	2 cut(s)	55, 457
MalI	GATC	4 cut(s)	230, 234, 416, 486
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	4 cut(s)	228, 232, 414, 484
MboII	GAAGA	7 cut(s)	127, 227, 303, 312, 683, 893, 953
MhlI	GDGCHC	4 cut(s)	369, 398, 571, 593
MlsI	TGGCCA	1 cut(s)	916
MluCI	AATT	8 cut(s)	153, 180, 212, 240, 291, 316, 504, 651
MluI	ACGCGT	1 cut(s)	461
MluNI	TGGCCA	1 cut(s)	916
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	5 cut(s)	16, 130, 201, 297, 685
Mox20I	TGGCCA	1 cut(s)	916
MscI	TGGCCA	1 cut(s)	916
MseI	TTAA	1 cut(s)	860
Msp20I	TGGCCA	1 cut(s)	916
MspA1I	CMGCKG	3 cut(s)	328, 596, 775
MspI	CCGG	1 cut(s)	815
MspR9I	CCNGG	1 cut(s)	873
MvaI	CCWGG	1 cut(s)	873
MvnI	CGCG	2 cut(s)	463, 775
MwoI	GCNNNNNNNGC	4 cut(s)	437, 541, 674, 964
NdeII	GATC	4 cut(s)	228, 232, 414, 484
NlaIII	CATG	7 cut(s)	104, 277, 302, 439, 617, 691, 958
NlaIV	GGNNCC	3 cut(s)	118, 397, 534
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	314
PagI	TCATGA	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	522, 631, 774
Ppu21I	YACGTR	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	871
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	871
PspN4I	GGNNCC	3 cut(s)	118, 397, 534
PspPI	GGNCC	3 cut(s)	167, 574, 875
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	4 cut(s)	51, 118, 554, 686
RsaNI	GTAC	4 cut(s)	50, 117, 553, 685
SacI	GAGCTC	1 cut(s)	369
SacII	CCGCGG	1 cut(s)	776
SaqAI	TTAA	1 cut(s)	860
SatI	GCNGC	3 cut(s)	521, 630, 773
Sau3AI	GATC	4 cut(s)	228, 232, 414, 484
Sau96I	GGNCC	3 cut(s)	167, 574, 875
ScrFI	CCNGG	1 cut(s)	873
SduI	GDGCHC	4 cut(s)	369, 398, 571, 593
SfaNI	GCATC	2 cut(s)	84, 900
Sfr303I	CCGCGG	1 cut(s)	776
SfuI	TTCGAA	1 cut(s)	314
SgrBI	CCGCGG	1 cut(s)	776
SinI	GGWCC	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	368, 837
SmoI	CTYRAG	2 cut(s)	368, 837
Sse9I	AATT	8 cut(s)	153, 180, 212, 240, 291, 316, 504, 651
SsiI	CCGC	6 cut(s)	328, 455, 520, 594, 773, 775
SspMI	CTAG	2 cut(s)	620, 678
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	871
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	865
TaiI	ACGT	2 cut(s)	146, 716
TaqI	TCGA	3 cut(s)	231, 314, 894
TasI	AATT	8 cut(s)	153, 180, 212, 240, 291, 316, 504, 651
TatI	WGTACW	3 cut(s)	49, 552, 684
TauI	GCSGC	2 cut(s)	523, 775
Tru1I	TTAA	1 cut(s)	860
Tru9I	TTAA	1 cut(s)	860
TscAI	CASTG	2 cut(s)	64, 516
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	329, 943
TspRI	CASTG	2 cut(s)	64, 516
VneI	GTGCAC	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	882
XapI	RAATTY	4 cut(s)	153, 180, 212, 316
XspI	CTAG	2 cut(s)	620, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.