Rmu_co8282453.1_g000001

Acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8282453.1
OG0000375
Physical Location & Seq
Reverse (-)
283 .. 738
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8282453.1_g000001.1.cds

Sequence Viewer

Length: 456 bp
atggatgttttccctctaaatggaattaaaaactaccaaggcacttccgagccgttacttgcggttcaagtaacggagcttgcagacggtattttcatcggttgcaccatcaaccacaccgctgttgatggcacttccttttggcatttcttcaattcttggtctgaaatctctcgcggctttgatcgcgtgtcgaagcctcctgttcttaaccgttggtttcttgatggaaccaatcttcccatccgcatttccttcccgaatgaccacaacaaagtgctcttcgacgaaatcatggatatcgaaccaccaccactaaaagagagggtctttcacttctcaaaggaaagcatcgctcaattgaaagcaaaagccaatgccgagattgatagcaatacaccaatctcctcaagcagttttagcttatctttggccctccataatacgctgcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

151

Amino Acids

16.95

Weight (kDa)

5.43

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 177, 189
AciI CCGC 4 cut(s) 62, 120, 177, 247
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 68, 154, 364
AloI GAACNNNNNNTCC 2 cut(s) 223, 255
AluBI AGCT 2 cut(s) 79, 423
AluI AGCT 2 cut(s) 79, 423
Alw21I GWGCWC 1 cut(s) 282
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 435
BccI CCATC 4 cut(s) 116, 122, 221, 251
BceAI ACGGC 1 cut(s) 37
BfmI CTRYAG 1 cut(s) 449
BisI GCNGC 2 cut(s) 178, 449
BlsI GCNGC 2 cut(s) 179, 450
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 2 cut(s) 10, 243
BseLI CCNNNNNNNGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 435
Bsh1236I CGCG 2 cut(s) 177, 189
BshFI GGCC 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 4 cut(s) 62, 120, 177, 247
BspANI GGCC 1 cut(s) 434
BspFNI CGCG 2 cut(s) 177, 189
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 453
BspQI GCTCTTC 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 89, 215
Bst6I CTCTTC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 81
BstF5I GGATG 2 cut(s) 10, 243
BstFNI CGCG 2 cut(s) 177, 189
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 186, 420
BstSFI CTRYAG 1 cut(s) 449
BstUI CGCG 2 cut(s) 177, 189
BstV1I GCAGC 1 cut(s) 435
BsuRI GGCC 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 2 cut(s) 10, 243
Cac8I GCNNGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 433
CviAII CATG 1 cut(s) 295
CviJI RGCY 7 cut(s) 52, 79, 180, 199, 374, 423, 434
CviKI_1 RGCY 7 cut(s) 52, 79, 180, 199, 374, 423, 434
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 37
Eco32I GATATC 1 cut(s) 301
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 1 cut(s) 298
FaiI YATR 2 cut(s) 296, 441
FatI CATG 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 178, 449
FokI GGATG 2 cut(s) 17, 230
Fsp4HI GCNGC 2 cut(s) 178, 449
GluI GCNGC 2 cut(s) 178, 449
HaeIII GGCC 1 cut(s) 434
Hin1II CATG 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 49, 166
Hpy188III TCNNGA 2 cut(s) 224, 259
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 89, 215
HpyCH4V TGCA 3 cut(s) 83, 105, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 420
Hsp92II CATG 1 cut(s) 298
Kzo9I GATC 1 cut(s) 184
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 1 cut(s) 216
Lsp1109I GCAGC 1 cut(s) 435
LweI GCATC 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 54, 70
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 3 cut(s) 142, 230, 274
MfeI CAATTG 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 3 cut(s) 24, 154, 359
MnlI CCTC 5 cut(s) 24, 210, 318, 418, 446
MseI TTAA 2 cut(s) 27, 210
MspA1I CMGCKG 1 cut(s) 122
MunI CAATTG 1 cut(s) 359
MvnI CGCG 2 cut(s) 177, 189
MwoI GCNNNNNNNGC 2 cut(s) 186, 420
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 232
NmeAIII GCCGAG 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 179, 450
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 433
PstI CTGCAG 1 cut(s) 453
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 27, 210
SatI GCNGC 2 cut(s) 178, 449
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 433
SduI GDGCHC 1 cut(s) 282
SetI ASST 2 cut(s) 81, 425
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
Sse9I AATT 3 cut(s) 24, 154, 359
SsiI CCGC 4 cut(s) 62, 120, 177, 247
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 89, 215
TaqI TCGA 3 cut(s) 194, 285, 303
TasI AATT 3 cut(s) 24, 154, 359
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 27, 210
Tru9I TTAA 2 cut(s) 27, 210
TseI GCWGC 1 cut(s) 448
TspDTI ATGAA 1 cut(s) 85
TspGWI ACGGA 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.