Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

15407202 .. 15411164

Gene Structure 3963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1175400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTTCTTCGTTTCCATCACGGGTGTTCTTCTCATTTGGAGATCGTCTTCTCTCTCCCTGCCTGCACTCCTCCTTCTCCTCCTCCATGTCCGCCATGACGTCATCTCAGTACCTCATAAACCCACCGTCCCTGCAACCACAAAAGCCATCCACATCTTCCGAAGCGCTCGCATCCACCATCTCCGGCAACCTCAAGATCAAACTCAATTTCCCGATATCCACAAGCTTTCACCTGTCGATGATGGCGTTGTATTTCAGAACCCGCATGATGCTATATTGCTATATGGACGAGTGGACGGATTCATGGTTGAACTAGAACCACGTTTCGAGAAGACCTTGTCAGGTTTAAGAGCACAGCTTGTTTTAGTGATTATTATTATTTCTCTTATATATGTCAGTCCACCATCAATATCTAAAGTTCATCAATCCTTCCTATGGCCACCAAAATTAATTGAAAATTCAGAAAACCTTATCAGCTTTGCCTTTGGTTGTGAACTGCTATCTCAAAATTGCCAAGAGCTCTTTGTACTAATCCAGCTTGATTACATCCAAAAGGGACTTCTCTTTCAAAAACCAGCAGAGAGCAGTTTGATACAACACCTAAAAGACTCCCTTTCCCGAACTTTGGATATCTTTTATCCACTCGCTGGCCGCCTCGCTGTGACGGAAAATAAGGATAAGACCCCTTCTTGTTTTTCTATCAACTGCAATGGCGACGGAGGACAGTTTGTCCATGCAGCTGCTGATGGTGTTGGAGTGGCTGATATTCTCGACCCTGTTTATGTTCCGGAGGATATTGTCTCCAACTTCTTCTCCATGAATGGGATTTTGAACTACGAAGGCGTGTCCAAACCCTTGCCTGCCGTGCAAGTAACTAAGCTGGTTGATGGCATTTTCATAGGTTGCACAATGAATCACTCTGTTGTTGAGGGGTCATCATTCTGGCATTTCTTTAACACTTGGTCGAAAATCTCTCGTTCGGGCAAAAATTCTGAACCCCCTCCCATTTTTGATCGGCCAACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

343

Amino Acids

38.08

Weight (kDa)

6.34

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	181 - 339	3.8e-36	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccIII	TCCGGA	1 cut(s)	787
AciI	CCGC	3 cut(s)	91, 263, 652
AcoI	YGGCCR	3 cut(s)	437, 649, 1016
AcsI	RAATTY	2 cut(s)	457, 988
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	2 cut(s)	111, 528
AfeI	AGCGCT	1 cut(s)	166
AfiI	CCNNNNNNNGG	4 cut(s)	435, 625, 647, 822
AgsI	TTSAA	4 cut(s)	311, 455, 569, 832
AhdI	GACNNNNNGTC	1 cut(s)	728
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	7 cut(s)	226, 358, 477, 520, 538, 740, 880
AluI	AGCT	7 cut(s)	226, 358, 477, 520, 538, 740, 880
Alw21I	GWGCWC	2 cut(s)	355, 522
Alw26I	GTCTC	1 cut(s)	805
AlwNI	CAGNNNCTG	1 cut(s)	743
Aor13HI	TCCGGA	1 cut(s)	787
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	3 cut(s)	437, 649, 1016
ApeKI	GCWGC	2 cut(s)	737, 740
ApoI	RAATTY	2 cut(s)	457, 988
AseI	ATTAAT	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	522
BbsI	GAAGAC	2 cut(s)	39, 338
Bbv12I	GWGCWC	2 cut(s)	355, 522
BbvI	GCAGC	2 cut(s)	727, 749
BccI	CCATC	7 cut(s)	23, 155, 186, 236, 412, 740, 881
BceAI	ACGGC	1 cut(s)	848
BcoDI	GTCTC	1 cut(s)	805
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	3 cut(s)	652, 738, 741
BlsI	GCNGC	3 cut(s)	653, 739, 742
BmeRI	GACNNNNNGTC	1 cut(s)	728
BmsI	GCATC	2 cut(s)	180, 259
BpiI	GAAGAC	2 cut(s)	39, 338
BpuEI	CTTGAG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	787
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	4 cut(s)	435, 625, 647, 822
Bse3DI	GCAATG	1 cut(s)	715
BseAI	TCCGGA	1 cut(s)	787
BseGI	GGATG	3 cut(s)	147, 171, 546
BseLI	CCNNNNNNNGG	4 cut(s)	435, 625, 647, 822
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	3 cut(s)	59, 68, 71
BseXI	GCAGC	2 cut(s)	727, 749
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	439, 651, 1018
BsiHKAI	GWGCWC	2 cut(s)	355, 522
BsiSI	CCGG	2 cut(s)	184, 788
BslFI	GGGAC	2 cut(s)	113, 570
BslI	CCNNNNNNNGG	4 cut(s)	435, 625, 647, 822
BsmAI	GTCTC	1 cut(s)	805
BsmFI	GGGAC	2 cut(s)	113, 570
BsnI	GGCC	3 cut(s)	439, 651, 1018
Bsp1286I	GDGCHC	2 cut(s)	355, 522
Bsp13I	TCCGGA	1 cut(s)	787
Bsp143I	GATC	3 cut(s)	41, 196, 1012
BspACI	CCGC	3 cut(s)	91, 263, 652
BspANI	GGCC	3 cut(s)	439, 651, 1018
BspCNI	CTCAG	1 cut(s)	119
BspEI	TCCGGA	1 cut(s)	787
BsrDI	GCAATG	1 cut(s)	715
BssMI	GATC	3 cut(s)	41, 196, 1012
BssNI	GRCGYC	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	127, 726
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	4 cut(s)	63, 169, 649, 861
BstDEI	CTNAG	2 cut(s)	106, 876
BstF5I	GGATG	3 cut(s)	147, 171, 546
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	44, 199, 1015
BstMAI	GTCTC	1 cut(s)	805
BstMBI	GATC	3 cut(s)	41, 196, 1012
BstMWI	GCNNNNNNNGC	1 cut(s)	865
BstV1I	GCAGC	2 cut(s)	727, 749
BstV2I	GAAGAC	2 cut(s)	39, 338
BsuRI	GGCC	3 cut(s)	439, 651, 1018
BtsCI	GGATG	3 cut(s)	147, 171, 546
Cac8I	GCNNGC	4 cut(s)	63, 169, 649, 861
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	110, 527
CviAII	CATG	6 cut(s)	86, 95, 266, 304, 734, 817
CviQI	GTAC	2 cut(s)	110, 527
DdeI	CTNAG	2 cut(s)	106, 876
DpnI	GATC	3 cut(s)	43, 198, 1014
DpnII	GATC	3 cut(s)	41, 196, 1012
DriI	GACNNNNNGTC	1 cut(s)	728
EaeI	YGGCCR	3 cut(s)	437, 649, 1016
Eam1105I	GACNNNNNGTC	1 cut(s)	728
EciI	GGCGGA	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	522
Eco32I	GATATC	2 cut(s)	217, 631
Eco47III	AGCGCT	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	520
EcoRV	GATATC	2 cut(s)	217, 631
EcoT38I	GRGCYC	1 cut(s)	522
FaeI	CATG	6 cut(s)	89, 98, 269, 307, 737, 820
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	2 cut(s)	113, 570
FatI	CATG	6 cut(s)	85, 94, 265, 303, 733, 816
FauI	CCCGC	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	652, 738, 741
FokI	GGATG	3 cut(s)	134, 158, 533
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	3 cut(s)	652, 738, 741
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	652, 738, 741
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	439, 651, 1018
HapII	CCGG	2 cut(s)	184, 788
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	6 cut(s)	89, 98, 269, 307, 737, 820
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	3 cut(s)	300, 608, 913
HpaII	CCGG	2 cut(s)	184, 788
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	3 cut(s)	295, 401, 494
Hpy188I	TCNGA	4 cut(s)	161, 258, 463, 994
Hpy188III	TCNNGA	7 cut(s)	194, 212, 328, 618, 770, 788, 1026
Hpy8I	GTNNAC	3 cut(s)	295, 401, 494
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	4 cut(s)	83, 439, 696, 833
HpyCH4III	ACNGT	2 cut(s)	127, 726
HpyCH4IV	ACGT	2 cut(s)	99, 322
HpyCH4V	TGCA	6 cut(s)	65, 134, 708, 737, 868, 906
HpyF10VI	GCNNNNNNNGC	1 cut(s)	865
HpyF3I	CTNAG	2 cut(s)	106, 876
HpySE526I	ACGT	2 cut(s)	99, 322
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	89, 98, 269, 307, 737, 820
HspAI	GCGC	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	41, 196, 1012
Lsp1109I	GCAGC	2 cut(s)	727, 749
LweI	GCATC	2 cut(s)	180, 259
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	2 cut(s)	99, 322
MaeIII	GTNAC	2 cut(s)	661, 871
MalI	GATC	3 cut(s)	43, 198, 1014
MboI	GATC	3 cut(s)	41, 196, 1012
MboII	GAAGA	5 cut(s)	20, 39, 148, 343, 802
MhlI	GDGCHC	2 cut(s)	355, 522
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	6 cut(s)	206, 446, 450, 457, 508, 988
MluNI	TGGCCA	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	733, 828
Mox20I	TGGCCA	1 cut(s)	439
MroI	TCCGGA	1 cut(s)	787
MscI	TGGCCA	1 cut(s)	439
MseI	TTAA	3 cut(s)	347, 449, 954
Msp20I	TGGCCA	1 cut(s)	439
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	2 cut(s)	184, 788
MwoI	GCNNNNNNNGC	1 cut(s)	865
NdeII	GATC	3 cut(s)	41, 196, 1012
NlaIII	CATG	6 cut(s)	89, 98, 269, 307, 737, 820
NmuCI	GTSAC	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	300, 913
PflFI	GACNNNGTC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	653, 739, 742
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
PshBI	ATTAAT	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	743
PsyI	GACNNNGTC	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	2 cut(s)	111, 528
RsaNI	GTAC	2 cut(s)	110, 527
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	3 cut(s)	347, 449, 954
SatI	GCNGC	3 cut(s)	652, 738, 741
Sau3AI	GATC	3 cut(s)	41, 196, 1012
SchI	GAGTC	1 cut(s)	602
SduI	GDGCHC	2 cut(s)	355, 522
SfaNI	GCATC	2 cut(s)	180, 259
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	6 cut(s)	206, 446, 450, 457, 508, 988
SsiI	CCGC	3 cut(s)	91, 263, 652
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	127, 726
TaiI	ACGT	2 cut(s)	102, 325
TaqI	TCGA	4 cut(s)	237, 327, 771, 965
TasI	AATT	6 cut(s)	206, 446, 450, 457, 508, 988
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	2 cut(s)	300, 913
Tru1I	TTAA	3 cut(s)	347, 449, 954
Tru9I	TTAA	3 cut(s)	347, 449, 954
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	2 cut(s)	737, 740
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	5 cut(s)	292, 410, 833, 886, 926
TspGWI	ACGGA	3 cut(s)	312, 680, 732
Tth111I	GACNNNGTC	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	647
VspI	ATTAAT	1 cut(s)	449
XapI	RAATTY	2 cut(s)	457, 988
XspI	CTAG	1 cut(s)	314
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.