Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17524005 .. 17524438

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG187700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCTCTGGGAATGCACTCCTTGGAATCCCTGTGAAGTCCACTGCAGCGGATCTGCTACACCGCACACTAGGTTGGGCGGCATTGCAGCTGACAAGGCTATTGCTTCCATTATTGCTAAAGAAACCAAGAAGTACCAGGAAGATTGGGGCGATTCGGCTGCAAGTTGGTCTAGTATTAGTTTGCTGACAAGAAGTTCACCGCGGTTTAATGTGTATGGGAATGATTTCGGGTGGGGGAGACCGCTGGCTGTGCCAAGCGAAGCTGTGGACAAGAGGAGTGGGAAGTTAACGGTGTTTCCTGGCACCAAAGAAGGAAGTGTTGACTTTGAAGTTTACCTTTTGCCGAAGATTCTACAAGCTATGGGGGATGATGCAGAGTTCATGGAAGCCGTGCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

133

Amino Acids

14.51

Weight (kDa)

5.12

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	60 - 128	3.1e-08	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccII	CGCG	1 cut(s)	202
AciI	CCGC	6 cut(s)	48, 62, 78, 200, 202, 242
AclWI	GGATC	1 cut(s)	58
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	135, 298
AluBI	AGCT	3 cut(s)	89, 263, 359
AluI	AGCT	3 cut(s)	89, 263, 359
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	58
ApeKI	GCWGC	3 cut(s)	45, 86, 158
Asp700I	GAANNNNTTC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	3 cut(s)	57, 98, 145
BceAI	ACGGC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	2 cut(s)	137, 300
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	69, 171
BfmI	CTRYAG	1 cut(s)	43
BisI	GCNGC	4 cut(s)	46, 79, 87, 159
BlsI	GCNGC	4 cut(s)	47, 80, 88, 160
Bme1390I	CCNGG	2 cut(s)	137, 300
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	137, 300
BmsI	GCATC	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	20, 200
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	137, 300
BseDI	CCNNGG	2 cut(s)	20, 200
BseGI	GGATG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	289
BseXI	GCAGC	3 cut(s)	57, 98, 145
Bsh1236I	CGCG	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	50
BspACI	CCGC	6 cut(s)	48, 62, 78, 200, 202, 242
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	47
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	20, 200
BssMI	GATC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	137, 300
Bst4CI	ACNGT	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 250
BstNI	CCWGG	2 cut(s)	137, 300
BstSCI	CCNGG	2 cut(s)	135, 298
BstSFI	CTRYAG	1 cut(s)	43
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	57, 98, 145
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	246
Cfr42I	CCGCGG	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	133
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	2 cut(s)	382, 399
CviJI	RGCY	7 cut(s)	89, 98, 158, 248, 263, 359, 389
CviKI_1	RGCY	7 cut(s)	89, 98, 158, 248, 263, 359, 389
CviQI	GTAC	1 cut(s)	133
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	135, 298
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	2 cut(s)	385, 402
FaiI	YATR	4 cut(s)	216, 362, 383, 400
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	2 cut(s)	381, 398
Fnu4HI	GCNGC	4 cut(s)	46, 79, 87, 159
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	4 cut(s)	46, 79, 87, 159
FspBI	CTAG	2 cut(s)	69, 171
GluI	GCNGC	4 cut(s)	46, 79, 87, 159
Hin1II	CATG	2 cut(s)	385, 402
HincII	GTYRAC	2 cut(s)	288, 322
HindII	GTYRAC	2 cut(s)	288, 322
HinfI	GANTC	3 cut(s)	25, 152, 349
HpaI	GTTAAC	1 cut(s)	288
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	6 cut(s)	40, 197, 268, 288, 322, 334
Hpy8I	GTNNAC	6 cut(s)	40, 197, 268, 288, 322, 334
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	15, 45, 86, 161, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 250
Hsp92II	CATG	2 cut(s)	385, 402
KspAI	GTTAAC	1 cut(s)	288
KspI	CCGCGG	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	6 cut(s)	43, 122, 149, 230, 285, 312
Lsp1109I	GCAGC	3 cut(s)	57, 98, 145
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	2 cut(s)	69, 171
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	2 cut(s)	152, 358
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	396
MnlI	CCTC	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	2 cut(s)	207, 287
MspA1I	CMGCKG	4 cut(s)	48, 89, 202, 244
MspR9I	CCNGG	2 cut(s)	137, 300
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	2 cut(s)	137, 300
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	95, 250
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	385, 402
NlaIV	GGNNCC	1 cut(s)	304
PctI	GAATGC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	25, 152, 349
PkrI	GCNGC	4 cut(s)	47, 80, 88, 160
Psp6I	CCWGG	2 cut(s)	135, 298
PspGI	CCWGG	2 cut(s)	135, 298
PspN4I	GGNNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SacII	CCGCGG	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	207, 287
SatI	GCNGC	4 cut(s)	46, 79, 87, 159
Sau3AI	GATC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	137, 300
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	5 cut(s)	74, 91, 265, 339, 361
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	43
Sfr303I	CCGCGG	1 cut(s)	203
SgrBI	CCGCGG	1 cut(s)	203
SsiI	CCGC	6 cut(s)	48, 62, 78, 200, 202, 242
SspMI	CTAG	2 cut(s)	69, 171
StyD4I	CCNGG	2 cut(s)	135, 298
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	292
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	3 cut(s)	25, 152, 349
Tru1I	TTAA	2 cut(s)	207, 287
Tru9I	TTAA	2 cut(s)	207, 287
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	3 cut(s)	45, 86, 158
TspDTI	ATGAA	1 cut(s)	370
TspRI	CASTG	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	2 cut(s)	69, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.