Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

9388341 .. 9389160

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16304.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGATAACAGTACCACATGTGTTTTCGTCAACTGTAGCGACGCCAGAGTCGAATTCTTCCACGCAGCTGCTTATTGTGTCAGAGTGGCCGATCTCCTTGATTCCGTGTACGTTCCAGATGACATTCTCTTCGCTCTTTCCCATGAATGGTGTTCGAAACTTTGAAGACATTTTGAAATCATTGCTTGCGGTGCAAGTAACTGAGCTTGCTGATGGCATCTTCATCAGTTGCAGCGTTAACCACTCGGTTGTGGATGGCACCTCTTTTTGGCATTTCCTAAATACTTGGTCCGAAATCTCTCGTTGTTCTAGCTCCGATCATCAAATGCCCCTTCCTATTTTTCATCGTCAATTTCTTGATGGCATAATTGATCTCCTAATTCACTTGCCCTTTCCTTACGATGAAATGTTCCCTAGTCAGCAGCAGCTTATCGATCAATCGTCTACAGAATCTTTCCGATTTCGGACTTTTCATTTTCCAAAAGAAAAGACCCTCTATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

169

Amino Acids

19.27

Weight (kDa)

5.34

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	43 - 155	1.2e-16	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	446
AciI	CCGC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	2 cut(s)	15, 112
AfiI	CCNNNNNNNGG	2 cut(s)	149, 270
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	167, 178
AluBI	AGCT	4 cut(s)	70, 208, 315, 430
AluI	AGCT	4 cut(s)	70, 208, 315, 430
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	5 cut(s)	67, 70, 234, 424, 427
ApoI	RAATTY	1 cut(s)	55
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AspS9I	GGNCC	1 cut(s)	291
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	5 cut(s)	57, 79, 246, 436, 439
BccI	CCATC	3 cut(s)	209, 251, 356
BfaI	CTAG	2 cut(s)	312, 417
BfmI	CTRYAG	2 cut(s)	36, 447
BisI	GCNGC	5 cut(s)	68, 71, 235, 425, 428
BlsI	GCNGC	5 cut(s)	69, 72, 236, 426, 429
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	262
BmsI	GCATC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	157
Bsa29I	ATCGAT	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 270
Bse3DI	GCAATG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	435
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	149, 270
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	195
BseXI	GCAGC	5 cut(s)	57, 79, 246, 436, 439
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	149, 270
BsnI	GGCC	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	157
Bsp143I	GATC	4 cut(s)	93, 319, 373, 436
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	196
BspDI	ATCGAT	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	262
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	182
BssMI	GATC	4 cut(s)	93, 319, 373, 436
BssNI	GRCGYC	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	13, 37
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	189, 210
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	4 cut(s)	96, 322, 376, 439
BstMBI	GATC	4 cut(s)	93, 319, 373, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	23
BstSFI	CTRYAG	2 cut(s)	36, 447
BstV1I	GCAGC	5 cut(s)	57, 79, 246, 436, 439
BstV2I	GAAGAC	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	91
BsuTUI	ATCGAT	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	189, 210
Cfr13I	GGNCC	1 cut(s)	291
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	14, 111
CviAII	CATG	2 cut(s)	20, 145
CviJI	RGCY	5 cut(s)	70, 91, 208, 315, 430
CviKI_1	RGCY	5 cut(s)	70, 91, 208, 315, 430
CviQI	GTAC	2 cut(s)	14, 111
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	4 cut(s)	95, 321, 375, 438
DpnII	GATC	4 cut(s)	93, 319, 373, 436
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	55
FaeI	CATG	2 cut(s)	23, 148
FaiI	YATR	6 cut(s)	21, 146, 368, 501, 503, 505
FatI	CATG	2 cut(s)	19, 144
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	5 cut(s)	68, 71, 235, 425, 428
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	5 cut(s)	68, 71, 235, 425, 428
FspBI	CTAG	2 cut(s)	312, 417
GluI	GCNGC	5 cut(s)	68, 71, 235, 425, 428
HaeIII	GGCC	1 cut(s)	91
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	23, 148
HincII	GTYRAC	2 cut(s)	33, 241
HindII	GTYRAC	2 cut(s)	33, 241
HinfI	GANTC	3 cut(s)	50, 103, 452
HpaI	GTTAAC	1 cut(s)	241
Hpy166II	GTNNAC	4 cut(s)	33, 111, 241, 447
Hpy188I	TCNGA	5 cut(s)	85, 295, 319, 461, 468
Hpy188III	TCNNGA	2 cut(s)	118, 359
Hpy8I	GTNNAC	4 cut(s)	33, 111, 241, 447
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	2 cut(s)	13, 37
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	196, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	23, 148
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	93, 319, 373, 436
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	2 cut(s)	60, 131
Lsp1109I	GCAGC	5 cut(s)	57, 79, 246, 436, 439
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	312, 417
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	4 cut(s)	95, 321, 375, 438
MboI	GATC	4 cut(s)	93, 319, 373, 436
MboII	GAAGA	5 cut(s)	16, 51, 123, 179, 214
MluCI	AATT	4 cut(s)	55, 353, 369, 381
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	2 cut(s)	274, 506
MseI	TTAA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	4 cut(s)	93, 319, 373, 436
NlaIII	CATG	2 cut(s)	23, 148
NlaIV	GGNNCC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	157
PciI	ACATGT	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	103, 452
PkrI	GCNGC	5 cut(s)	69, 72, 236, 426, 429
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	291
PvuII	CAGCTG	1 cut(s)	70
RsaI	GTAC	2 cut(s)	15, 112
RsaNI	GTAC	2 cut(s)	14, 111
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	5 cut(s)	68, 71, 235, 425, 428
Sau3AI	GATC	4 cut(s)	93, 319, 373, 436
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	59
SetI	ASST	6 cut(s)	72, 116, 210, 266, 317, 432
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	2 cut(s)	36, 447
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	291
Sse9I	AATT	4 cut(s)	55, 353, 369, 381
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	312, 417
TaaI	ACNGT	2 cut(s)	13, 37
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	53, 157, 435
TasI	AATT	4 cut(s)	55, 353, 369, 381
TfiI	GAWTC	2 cut(s)	103, 452
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	5 cut(s)	67, 70, 234, 424, 427
TspDTI	ATGAA	6 cut(s)	17, 161, 214, 335, 420, 464
TspGWI	ACGGA	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	446
XspI	CTAG	2 cut(s)	312, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.