Prupe.7G130000_v2.0.a1

acetyltransferase At3g50280-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000375
Physical Location & Seq
Reverse (-)
14990778 .. 14991158
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G130000.1

Sequence Viewer

Length: 381 bp
ATGAAAGCTGGGGAGGTTCTGGAACGTGGGCTTGGTTTTATGGCTTGGGAAATGAACAACATGGTGGCTTTGCAAACAGAAGAAAAACTGAGAAGCTTCTTGGAGTGTTGGGTGCAAGAGCCCAAGTTGCTTACAGAAGACAATATGGCTGCTAATGCTTTAGTCACAAGCAGCTCGCCGAGGTTCAACGTGAATGGCAATGACTTTGGTTGGGAAAGGCCAGTTGGGGTGAGAAACGGTGTTGGGAATAAGTCACATGGGAAGATTACAGTGTTTGCTGGGGTTGAAGAAGGCAGTATTGATATTGAAGCTTGTCTTTTGGCTGAGACCTTGGAGGCCATGGGAAATGATTCAGAATTCATGGATGTGGACACAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

127

Amino Acids

13.84

Weight (kDa)

4.39

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 356
AgsI TTSAA 3 cut(s) 187, 287, 308
AjuI GAANNNNNNNTTGG 4 cut(s) 15, 47, 207, 239
AluBI AGCT 4 cut(s) 8, 96, 174, 311
AluI AGCT 4 cut(s) 8, 96, 174, 311
Alw26I GTCTC 1 cut(s) 320
AoxI GGCC 2 cut(s) 218, 336
ApeKI GCWGC 2 cut(s) 149, 171
ApoI RAATTY 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 241
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 136, 183
BcoDI GTCTC 1 cut(s) 320
BisI GCNGC 2 cut(s) 150, 172
BlsI GCNGC 2 cut(s) 151, 173
BpiI GAAGAC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 3 cut(s) 179, 330, 339
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 205
BseDI CCNNGG 3 cut(s) 179, 330, 339
BseGI GGATG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 80, 315
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 136, 183
BseYI CCCAGC 2 cut(s) 8, 278
BshFI GGCC 2 cut(s) 220, 338
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 2 cut(s) 220, 338
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 339
BspANI GGCC 2 cut(s) 220, 338
BspCNI CTCAG 2 cut(s) 81, 316
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 3 cut(s) 179, 330, 339
BssT1I CCWWGG 2 cut(s) 330, 339
Bst4CI ACNGT 3 cut(s) 239, 271, 376
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 89, 324
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 320
BstMWI GCNNNNNNNGC 2 cut(s) 127, 155
BstV1I GCAGC 2 cut(s) 136, 183
BstV2I GAAGAC 1 cut(s) 144
BsuRI GGCC 2 cut(s) 220, 338
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 276, 381
Cac8I GCNNGC 1 cut(s) 176
CviAII CATG 4 cut(s) 61, 257, 340, 361
DdeI CTNAG 2 cut(s) 89, 324
Eco130I CCWWGG 2 cut(s) 330, 339
Eco24I GRGCYC 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 356
EcoT14I CCWWGG 2 cut(s) 330, 339
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 2 cut(s) 330, 339
FaeI CATG 4 cut(s) 64, 260, 343, 364
FaiI YATR 6 cut(s) 41, 62, 146, 258, 341, 362
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 4 cut(s) 60, 256, 339, 360
Fnu4HI GCNGC 2 cut(s) 150, 172
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 2 cut(s) 150, 172
GluI GCNGC 2 cut(s) 150, 172
GsaI CCCAGC 2 cut(s) 12, 282
HaeIII GGCC 2 cut(s) 220, 338
Hin1II CATG 4 cut(s) 64, 260, 343, 364
HindIII AAGCTT 2 cut(s) 94, 309
HinfI GANTC 1 cut(s) 350
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 3 cut(s) 239, 271, 376
HpyCH4IV ACGT 2 cut(s) 25, 189
HpyCH4V TGCA 2 cut(s) 73, 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 155
HpyF3I CTNAG 2 cut(s) 89, 324
HpySE526I ACGT 2 cut(s) 25, 189
Hsp92II CATG 4 cut(s) 64, 260, 343, 364
LpnPI CCDG 3 cut(s) 5, 234, 264
Lsp1109I GCAGC 2 cut(s) 136, 183
MaeII ACGT 2 cut(s) 25, 189
MaeIII GTNAC 2 cut(s) 163, 252
MboII GAAGA 4 cut(s) 92, 149, 274, 299
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 356
MnlI CCTC 3 cut(s) 7, 174, 328
MroXI GAANNNNTTC 1 cut(s) 349
MslI CAYNNNNRTG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 127, 155
NcoI CCATGG 1 cut(s) 339
NlaIII CATG 4 cut(s) 64, 260, 343, 364
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 163, 252
PdmI GAANNNNTTC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 151, 173
PspFI CCCAGC 2 cut(s) 8, 278
RseI CAYNNNNRTG 1 cut(s) 365
SatI GCNGC 2 cut(s) 150, 172
SduI GDGCHC 1 cut(s) 123
SetI ASST 9 cut(s) 10, 18, 28, 98, 176, 185, 192, 313, 332
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 1 cut(s) 356
StyI CCWWGG 2 cut(s) 330, 339
TaaI ACNGT 3 cut(s) 239, 271, 376
TaiI ACGT 2 cut(s) 28, 192
TasI AATT 1 cut(s) 356
TfiI GAWTC 1 cut(s) 350
TscAI CASTG 2 cut(s) 276, 381
TseFI GTSAC 2 cut(s) 163, 252
TseI GCWGC 2 cut(s) 149, 171
Tsp45I GTSAC 2 cut(s) 163, 252
TspDTI ATGAA 3 cut(s) 17, 68, 349
TspRI CASTG 2 cut(s) 276, 381
XapI RAATTY 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.