Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

26107538 .. 26108485

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1286200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAATGGGATTTTGAATTACGAAGGCGGCGTGTCCAAACCCTTGCTTGCAGTGCAGGTAACTGAGCTTGTTGATGGCATTTTCATAGGTTGCACTATGAACCACTCCATCGTTGATGGGTCTTCATTCTGGCACTTCTTCAATACTTGGTCAGAAATCTCTCGGCGTGGTAGTACTAATGGTAAACTCTCACAACCTCCGCCAATTTTTGGACGTGAATATCTTGACGGCATCATTGATCTCCCAGTTCGCATTCCCTTCTTTCAAAATCAAATCCCCAAAACTAAGTTTTTAGCACCCATCCTTAAGCAAAGAGTGTTTCATTTTTCCAAGGAAACAATTGCGCAACTCAAAGCCAAAGCGAATTCTGAAATGGGAACTACCAAGATCTCATCCCTTCAAGCACTGTTGGCTCATCTTTGGTTATCCGTAACCCGCAACCAATGTCTCAGCACTGGTCAAGAAACTATGTACAAAGTACTAGTTGGAATGAGGCAGAGATTGCAGCCACCATTGCCAGACCAGTACCTTGGAAATGCGGTTCTATTTGGCATAGTAACATCCAGTGTAGGTGAATTGCTTGAGCGCGGACTAGGCTGGGCTGCGTGGGAAATGAACAAGATGATTGCTGCACAAACAGAACATGATGTAAGGAAGCTGTTGGAGGATTGGATTAAAAATCCCAAAGTACCAAACCTCGGTAGCTTGGCAAGTAACTCATTATTGACAGGAAGCTCGCCGCGATTTGATGTGTTTGGTAATGACTTCGGTTGGGGAAGGCCGCTGGCTGTTCGAAGTGGCGCTGGGAATAAGTTTGATGGCAAATTAACTGTATTTCAAGGGGCTGAAGAGGGAAGTATTGATTTTGAAGCTTGCCTTTCGCCTCAGACACTGCATGCTTTGGCACACGACGCAGAGTTTATGGCGAGTCTGACTAGGCGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

316

Amino Acids

34.85

Weight (kDa)

8.72

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	11 - 308	7.6e-55	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccII	CGCG	2 cut(s)	588, 742
AciI	CCGC	7 cut(s)	27, 200, 436, 539, 588, 740, 782
AcsI	RAATTY	2 cut(s)	364, 942
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	5 cut(s)	175, 473, 480, 527, 690
AfiI	CCNNNNNNNGG	2 cut(s)	209, 698
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	6 cut(s)	16, 142, 266, 401, 839, 869
AhlI	ACTAGT	1 cut(s)	481
AjiI	CACGTC	1 cut(s)	215
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
AluBI	AGCT	5 cut(s)	67, 658, 705, 735, 872
AluI	AGCT	5 cut(s)	67, 658, 705, 735, 872
Alw26I	GTCTC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	892
AoxI	GGCC	1 cut(s)	779
ApeKI	GCWGC	3 cut(s)	505, 602, 629
ApoI	RAATTY	2 cut(s)	364, 942
AspLEI	GCGC	3 cut(s)	346, 588, 803
AsuHPI	GGTGA	1 cut(s)	584
AsuII	TTCGAA	1 cut(s)	793
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	517, 589, 616
BccI	CCATC	5 cut(s)	68, 110, 116, 308, 812
BceAI	ACGGC	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	452
BcuI	ACTAGT	1 cut(s)	481
BfaI	CTAG	3 cut(s)	482, 593, 936
BfoI	RGCGCY	1 cut(s)	804
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	46
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	6 cut(s)	28, 506, 603, 630, 740, 782
BlsI	GCNGC	6 cut(s)	29, 507, 604, 631, 741, 783
BmcAI	AGTACT	2 cut(s)	175, 480
BmgBI	CACGTC	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	602
BsaJI	CCNNGG	3 cut(s)	330, 529, 697
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 698
Bse1I	ACTGG	4 cut(s)	245, 460, 523, 564
Bse3DI	GCAATG	1 cut(s)	512
BseDI	CCNNGG	3 cut(s)	330, 529, 697
BseGI	GGATG	3 cut(s)	300, 392, 560
BseLI	CCNNNNNNNGG	2 cut(s)	209, 698
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	3 cut(s)	54, 463, 899
BseNI	ACTGG	4 cut(s)	245, 460, 523, 564
BseXI	GCAGC	3 cut(s)	517, 589, 616
BseYI	CCCAGC	2 cut(s)	597, 803
BsgI	GTGCAG	2 cut(s)	74, 615
Bsh1236I	CGCG	2 cut(s)	588, 742
BshFI	GGCC	1 cut(s)	781
BslI	CCNNNNNNNGG	2 cut(s)	209, 698
BsmAI	GTCTC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	781
Bsp119I	TTCGAA	1 cut(s)	793
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	238, 387
BspACI	CCGC	7 cut(s)	27, 200, 436, 539, 588, 740, 782
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	3 cut(s)	55, 462, 898
BspFNI	CGCG	2 cut(s)	588, 742
BspMI	ACCTGC	1 cut(s)	46
BspT104I	TTCGAA	1 cut(s)	793
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	4 cut(s)	245, 460, 523, 564
BssECI	CCNNGG	3 cut(s)	330, 529, 697
BssMI	GATC	2 cut(s)	238, 387
BssT1I	CCWWGG	2 cut(s)	330, 529
Bst4CI	ACNGT	2 cut(s)	408, 832
Bst6I	CTCTTC	1 cut(s)	843
BstAFI	CTTAAG	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstAUI	TGTACA	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	793
BstC8I	GCNNGC	5 cut(s)	48, 737, 786, 874, 897
BstDEI	CTNAG	4 cut(s)	63, 285, 449, 885
BstF5I	GGATG	3 cut(s)	300, 392, 560
BstFNI	CGCG	2 cut(s)	588, 742
BstH2I	RGCGCY	1 cut(s)	804
BstHHI	GCGC	3 cut(s)	346, 588, 803
BstKTI	GATC	2 cut(s)	241, 390
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	2 cut(s)	238, 387
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 410, 502, 514, 594, 911
BstNSI	RCATGY	1 cut(s)	899
BstUI	CGCG	2 cut(s)	588, 742
BstV1I	GCAGC	3 cut(s)	517, 589, 616
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	781
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	3 cut(s)	300, 392, 560
BtsI	GCAGTG	2 cut(s)	57, 890
BtsIMutI	CAGTG	5 cut(s)	57, 404, 453, 571, 890
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	5 cut(s)	48, 737, 786, 874, 897
CaiI	CAGNNNCTG	1 cut(s)	892
CfoI	GCGC	3 cut(s)	346, 588, 803
CseI	GACGC	1 cut(s)	920
Csp6I	GTAC	5 cut(s)	174, 472, 479, 526, 689
CviAII	CATG	2 cut(s)	644, 896
CviQI	GTAC	5 cut(s)	174, 472, 479, 526, 689
DdeI	CTNAG	4 cut(s)	63, 285, 449, 885
DpnI	GATC	2 cut(s)	240, 389
DpnII	GATC	2 cut(s)	238, 387
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
EciI	GGCGGA	1 cut(s)	189
Eco130I	CCWWGG	2 cut(s)	330, 529
Eco57I	CTGAAG	1 cut(s)	867
EcoRI	GAATTC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	330, 529
ErhI	CCWWGG	2 cut(s)	330, 529
FaeI	CATG	2 cut(s)	647, 899
FaiI	YATR	7 cut(s)	86, 98, 470, 554, 645, 897, 923
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FatI	CATG	2 cut(s)	643, 895
FauI	CCCGC	1 cut(s)	443
Fnu4HI	GCNGC	6 cut(s)	28, 506, 603, 630, 740, 782
FokI	GGATG	3 cut(s)	287, 379, 547
Fsp4HI	GCNGC	6 cut(s)	28, 506, 603, 630, 740, 782
FspBI	CTAG	3 cut(s)	482, 593, 936
FspI	TGCGCA	1 cut(s)	345
GlaI	GCGC	3 cut(s)	345, 587, 802
GluI	GCNGC	6 cut(s)	28, 506, 603, 630, 740, 782
GsaI	CCCAGC	2 cut(s)	601, 807
HaeII	RGCGCY	1 cut(s)	804
HaeIII	GGCC	1 cut(s)	781
HgaI	GACGC	1 cut(s)	920
HhaI	GCGC	3 cut(s)	346, 588, 803
Hin1II	CATG	2 cut(s)	647, 899
Hin6I	GCGC	3 cut(s)	344, 586, 801
HinP1I	GCGC	3 cut(s)	344, 586, 801
HindIII	AAGCTT	1 cut(s)	870
HinfI	GANTC	1 cut(s)	928
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	4 cut(s)	154, 370, 888, 933
Hpy188III	TCNNGA	2 cut(s)	224, 461
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	1 cut(s)	914
HpyAV	CCTTC	4 cut(s)	17, 268, 407, 771
HpyCH4III	ACNGT	2 cut(s)	408, 832
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	6 cut(s)	50, 55, 93, 505, 632, 895
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 410, 502, 514, 594, 911
HpyF3I	CTNAG	4 cut(s)	63, 285, 449, 885
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	647, 899
HspAI	GCGC	3 cut(s)	344, 586, 801
Kzo9I	GATC	2 cut(s)	238, 387
Lsp1109I	GCAGC	3 cut(s)	517, 589, 616
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	3 cut(s)	482, 593, 936
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	4 cut(s)	58, 430, 556, 713
MalI	GATC	2 cut(s)	240, 389
MboI	GATC	2 cut(s)	238, 387
MboII	GAAGA	3 cut(s)	114, 130, 860
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	387
MluCI	AATT	7 cut(s)	16, 204, 339, 364, 575, 824, 942
MlyI	GAGTC	1 cut(s)	937
MmeI	TCCRAC	2 cut(s)	466, 642
MnlI	CCTC	6 cut(s)	207, 486, 658, 707, 844, 894
MseI	TTAA	3 cut(s)	306, 675, 827
MspA1I	CMGCKG	1 cut(s)	784
MspCI	CTTAAG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	252
MvnI	CGCG	2 cut(s)	588, 742
MwoI	GCNNNNNNNGC	6 cut(s)	52, 410, 502, 514, 594, 911
NdeII	GATC	2 cut(s)	238, 387
NlaIII	CATG	2 cut(s)	647, 899
NmeAIII	GCCGAG	1 cut(s)	142
NsbI	TGCGCA	1 cut(s)	345
NspI	RCATGY	1 cut(s)	899
NspV	TTCGAA	1 cut(s)	793
PaeI	GCATGC	1 cut(s)	899
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	29, 507, 604, 631, 741, 783
PleI	GAGTC	1 cut(s)	936
PpsI	GAGTC	1 cut(s)	936
PspFI	CCCAGC	2 cut(s)	597, 803
PstNI	CAGNNNCTG	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	5 cut(s)	175, 473, 480, 527, 690
RsaNI	GTAC	5 cut(s)	174, 472, 479, 526, 689
SaqAI	TTAA	3 cut(s)	306, 675, 827
SatI	GCNGC	6 cut(s)	28, 506, 603, 630, 740, 782
Sau3AI	GATC	2 cut(s)	238, 387
ScaI	AGTACT	2 cut(s)	175, 480
SchI	GAGTC	1 cut(s)	937
SfaNI	GCATC	1 cut(s)	240
SfuI	TTCGAA	1 cut(s)	793
SmlI	CTYRAG	2 cut(s)	305, 581
SmoI	CTYRAG	2 cut(s)	305, 581
SpeI	ACTAGT	1 cut(s)	481
SphI	GCATGC	1 cut(s)	899
Sse9I	AATT	7 cut(s)	16, 204, 339, 364, 575, 824, 942
SsiI	CCGC	7 cut(s)	27, 200, 436, 539, 588, 740, 782
SspMI	CTAG	3 cut(s)	482, 593, 936
StyI	CCWWGG	2 cut(s)	330, 529
TaaI	ACNGT	2 cut(s)	408, 832
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	793
TasI	AATT	7 cut(s)	16, 204, 339, 364, 575, 824, 942
TatI	WGTACW	3 cut(s)	173, 471, 478
TauI	GCSGC	3 cut(s)	30, 742, 784
Tru1I	TTAA	3 cut(s)	306, 675, 827
Tru9I	TTAA	3 cut(s)	306, 675, 827
TscAI	CASTG	5 cut(s)	57, 411, 460, 571, 897
TseI	GCWGC	3 cut(s)	505, 602, 629
TspDTI	ATGAA	6 cut(s)	17, 73, 113, 114, 311, 629
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	5 cut(s)	57, 411, 460, 571, 897
Van91I	CCANNNNNTGG	1 cut(s)	209
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	2 cut(s)	364, 942
XceI	RCATGY	1 cut(s)	899
XspI	CTAG	3 cut(s)	482, 593, 936
ZrmI	AGTACT	2 cut(s)	175, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.