Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17840444 .. 17841154

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG183800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACGATTTACTCAACCCTGATTGCATTCCTGATAACATCATCCACAATCTTTTTCCCTTGAATTCGGTTGCGAACTATGAAGGGATTTCAAAACCATTGCTTGCGGGCTTGCGGGCTTGCGGGCTTGCGGCACAAGTCACTGATCTTGTCGATGGCATCTTCATCAGTTGCAGCTCAAACCATGCCGTTATAGATGGTACCTCTTTCTGGCATTTCTTTAATACTTGGTCTGAAATCTCTCGTATTGGTTCAGATCAAATCTCTGGAGTACCACTTCCTGCTTGTGGTAGGGAGTTTTGTGATGGCATAACTGATCTCCCAATTCGCCTACCATTTTCTTACAGTGAAACAATCAAGGGTAAGAAAATAATTGAACCATCTACAGATCATTTTTTACAAACGGTAGTATTTCATTTTCCCAAAGAAAAAATAGTCGAGCTCAAAGCAAAGGCCAATGCTGAGATGGGCACCAATAATGTCATCTCGTCGCTTCAAGCACTAATGGCTCATCTTTGGCGAGCCATAACACGTAGCAACCATGACCTCAACCCTGATGAAGAGACTACATATATGGTTGTTGTAGGATTGAGGCAAAGATTGATGCCACCATTGCCAAAGGAATATCTTGGAAATGCCTACATAGGGGTTATGATTAAGTCCACTGCCAATGAATTGCTACAACAAGGACTAGGCTGGGTGGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

236

Amino Acids

26.08

Weight (kDa)

5.45

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	9 - 235	2.6e-36	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	2 cut(s)	200, 470
AciI	CCGC	4 cut(s)	107, 115, 123, 131
AcsI	RAATTY	1 cut(s)	64
AfaI	GTAC	2 cut(s)	202, 273
AfiI	CCNNNNNNNGG	3 cut(s)	210, 287, 645
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	4 cut(s)	64, 93, 377, 497
AluBI	AGCT	2 cut(s)	177, 442
AluI	AGCT	2 cut(s)	177, 442
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	557
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	64
Asp718I	GGTACC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	473
BanI	GGYRCC	2 cut(s)	200, 470
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	5 cut(s)	149, 191, 299, 388, 460
BceAI	ACGGC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	132, 175
BlsI	GCNGC	2 cut(s)	133, 176
BmiI	GGNNCC	2 cut(s)	202, 472
BmsI	GCATC	2 cut(s)	168, 594
BpmI	CTGGAG	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 287, 645
Bse3DI	GCAATG	2 cut(s)	98, 611
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	3 cut(s)	210, 287, 645
BseMI	GCAATG	2 cut(s)	98, 611
BseMII	CTCAG	1 cut(s)	453
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	186
BseYI	CCCAGC	1 cut(s)	696
BshFI	GGCC	1 cut(s)	455
BshNI	GGYRCC	2 cut(s)	200, 470
BsiHKAI	GWGCWC	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	210, 287, 645
BsmAI	GTCTC	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	444, 473
Bsp143I	GATC	4 cut(s)	145, 256, 316, 388
BspACI	CCGC	4 cut(s)	107, 115, 123, 131
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	202, 472
BspT107I	GGYRCC	2 cut(s)	200, 470
BsrDI	GCAATG	2 cut(s)	98, 611
BssMI	GATC	4 cut(s)	145, 256, 316, 388
Bst4CI	ACNGT	2 cut(s)	347, 406
Bst6I	CTCTTC	1 cut(s)	555
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	8 cut(s)	105, 109, 113, 117, 121, 125, 129, 522
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	4 cut(s)	148, 259, 319, 391
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	4 cut(s)	145, 256, 316, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 613
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	141, 352, 663
Cac8I	GCNNGC	8 cut(s)	105, 109, 113, 117, 121, 125, 129, 522
Csp6I	GTAC	2 cut(s)	201, 272
CviAII	CATG	2 cut(s)	185, 542
CviJI	RGCY	9 cut(s)	111, 119, 127, 177, 442, 455, 509, 524, 696
CviKI_1	RGCY	9 cut(s)	111, 119, 127, 177, 442, 455, 509, 524, 696
CviQI	GTAC	2 cut(s)	201, 272
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	4 cut(s)	147, 258, 318, 390
DpnII	GATC	4 cut(s)	145, 256, 316, 388
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
EcoICRI	GAGCTC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	2 cut(s)	188, 545
FatI	CATG	2 cut(s)	184, 541
FauI	CCCGC	3 cut(s)	100, 108, 116
Fnu4HI	GCNGC	2 cut(s)	132, 175
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	132, 175
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	2 cut(s)	132, 175
GsaI	CCCAGC	1 cut(s)	700
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	455
Hin1II	CATG	2 cut(s)	188, 545
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	2 cut(s)	235, 256
Hpy188III	TCNNGA	2 cut(s)	32, 267
Hpy8I	GTNNAC	1 cut(s)	663
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	347, 406
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	2 cut(s)	27, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 613
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	2 cut(s)	188, 545
KpnI	GGTACC	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	145, 256, 316, 388
LpnPI	CCDG	7 cut(s)	33, 45, 196, 252, 294, 567, 682
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	2 cut(s)	168, 594
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	4 cut(s)	147, 258, 318, 390
MboI	GATC	4 cut(s)	145, 256, 316, 388
MboII	GAAGA	2 cut(s)	154, 572
MhlI	GDGCHC	2 cut(s)	444, 473
MluCI	AATT	4 cut(s)	64, 324, 372, 674
MnlI	CCTC	3 cut(s)	214, 557, 585
MseI	TTAA	2 cut(s)	222, 657
Mva1269I	GAATGC	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	506, 613
NdeII	GATC	4 cut(s)	145, 256, 316, 388
NlaIII	CATG	2 cut(s)	188, 545
NlaIV	GGNNCC	2 cut(s)	202, 472
NmuCI	GTSAC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	133, 176
Ppu21I	YACGTR	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	696
PspN4I	GGNNCC	2 cut(s)	202, 472
RsaI	GTAC	2 cut(s)	202, 273
RsaNI	GTAC	2 cut(s)	201, 272
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	222, 657
SatI	GCNGC	2 cut(s)	132, 175
Sau3AI	GATC	4 cut(s)	145, 256, 316, 388
SduI	GDGCHC	2 cut(s)	444, 473
SetI	ASST	5 cut(s)	179, 206, 444, 535, 549
SfaNI	GCATC	2 cut(s)	168, 594
SfcI	CTRYAG	1 cut(s)	384
Sse9I	AATT	4 cut(s)	64, 324, 372, 674
SsiI	CCGC	4 cut(s)	107, 115, 123, 131
SspMI	CTAG	1 cut(s)	692
SstI	GAGCTC	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	347, 406
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	2 cut(s)	153, 438
TasI	AATT	4 cut(s)	64, 324, 372, 674
TauI	GCSGC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	222, 657
Tru9I	TTAA	2 cut(s)	222, 657
TscAI	CASTG	3 cut(s)	148, 352, 670
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	5 cut(s)	96, 154, 404, 573, 687
TspRI	CASTG	3 cut(s)	148, 352, 670
XapI	RAATTY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.