Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

26102542 .. 26103333

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1286100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAACCACTCGGTTATTGATGGGTCGACATTCTGGCGTTTCTTCAACACTTGGTCCAAGATCTCTCACGGTGGTGGTGGTCGCGATGGAATTTCGCGATCACCTCTTATTTTTTACCGTGAGTTTCTGGACGGCATCATTGATCTTCCAGTTCGCATTCCCTTCTTCCGTAGTCAGATCCCAGATAAATTTCTACCACCACCTCTTAAACAACGGGTATTTCATTTCCCCAAGGAAAAAATTGCTCAGCTCAAAGCCAAAGCCAATGCCGAGATGGGCACCACCAAGATCTCATCCTTGCAAGCACTTTTAGCTCATCTTTGGGTTTCCATAACCCGCACTAGGCATCTCAACCCCGACCAAGAAATTAAATATCGTTTACTAGTAGGCCTGAGGCAAAAATTGCAGCCGCCATTACCCGATGAATACCTTGGCAATGCGGTTCTTTTTGGCATGACCACATCCACCGTGAGCGATTTGCTCTACTGCGAACTAGGCTGGGTGGCTTTGGAAATGAACAAGATGATTGCTTCAAAGACGAAAGAGGATGCTATAAATTTTTTGAAGCAATGGATGAAGAGTCCAAAAATGACCAAAATGAATGCTTTAGCAAGTGATCACGCATTGGCCACAGGAAGCTCGCCGCGATTTAATATGTATATTAACAACTTTGGTTGGGGAAGTCCTCTGGCAGTTAGAAGTGGTGCCAGGAACAAGTTCGGTGGGAAGTTGACGGTGTTTCCCGGGGCCGAAGATGGAAGCATTGATTTTGAAGCTTGCCTCTCGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

264

Amino Acids

29.54

Weight (kDa)

9.72

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 262	5.1e-39	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	278, 704
AccI	GTMKAC	1 cut(s)	26
AccII	CGCG	3 cut(s)	84, 97, 646
AciI	CCGC	4 cut(s)	337, 410, 440, 644
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	3 cut(s)	90, 188, 556
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	4 cut(s)	46, 534, 565, 773
AhlI	ACTAGT	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	707
AleI	CACNNNNGTG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	250, 314, 639, 776
AluI	AGCT	4 cut(s)	250, 314, 639, 776
AlwI	GGATC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	3 cut(s)	388, 627, 747
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	3 cut(s)	90, 188, 556
Asp700I	GAANNNNTTC	1 cut(s)	716
AspS9I	GGNCC	2 cut(s)	54, 747
AsuC2I	CCSGG	2 cut(s)	744, 745
AsuHPI	GGTGA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	1 cut(s)	54
AxyI	CCTNAGG	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	629
BanI	GGYRCC	2 cut(s)	278, 704
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	4 cut(s)	14, 80, 268, 749
BceAI	ACGGC	2 cut(s)	148, 772
BciT130I	CCWGG	1 cut(s)	709
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	2 cut(s)	744, 745
BcuI	ACTAGT	1 cut(s)	382
BfaI	CTAG	3 cut(s)	342, 383, 494
BglII	AGATCT	2 cut(s)	60, 288
BisI	GCNGC	3 cut(s)	407, 410, 644
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	3 cut(s)	408, 411, 645
Bme1390I	CCNGG	3 cut(s)	709, 744, 745
Bme18I	GGWCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	54, 747
BmiI	GGNNCC	3 cut(s)	280, 706, 748
BmrFI	CCNGG	3 cut(s)	709, 744, 745
BmsI	GCATC	3 cut(s)	144, 355, 538
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuMI	CCSGG	2 cut(s)	744, 745
BsaJI	CCNNGG	4 cut(s)	231, 430, 743, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	2 cut(s)	442, 575
BseBI	CCWGG	1 cut(s)	709
BseDI	CCNNGG	4 cut(s)	231, 430, 743, 744
BseGI	GGATG	4 cut(s)	293, 461, 553, 579
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	2 cut(s)	442, 575
BseMII	CTCAG	2 cut(s)	260, 383
BseNI	ACTGG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	418
BseYI	CCCAGC	1 cut(s)	498
Bsh1236I	CGCG	3 cut(s)	84, 97, 646
BshFI	GGCC	3 cut(s)	390, 629, 749
BshNI	GGYRCC	2 cut(s)	278, 704
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	1 cut(s)	744
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmI	GAATGC	2 cut(s)	156, 607
BsnI	GGCC	3 cut(s)	390, 629, 749
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	6 cut(s)	60, 98, 142, 177, 288, 616
Bsp1720I	GCTNAGC	1 cut(s)	246
Bsp68I	TCGCGA	2 cut(s)	84, 97
BspACI	CCGC	4 cut(s)	337, 410, 440, 644
BspANI	GGCC	3 cut(s)	390, 629, 749
BspCNI	CTCAG	2 cut(s)	259, 384
BspFNI	CGCG	3 cut(s)	84, 97, 646
BspLI	GGNNCC	3 cut(s)	280, 706, 748
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	2 cut(s)	278, 704
BsrDI	GCAATG	2 cut(s)	442, 575
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	4 cut(s)	231, 430, 743, 744
BssMI	GATC	6 cut(s)	60, 98, 142, 177, 288, 616
BssT1I	CCWWGG	2 cut(s)	231, 430
Bst2UI	CCWGG	1 cut(s)	709
Bst4CI	ACNGT	4 cut(s)	71, 119, 469, 736
Bst6I	CTCTTC	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	303, 641, 778
BstDEI	CTNAG	2 cut(s)	246, 392
BstF5I	GGATG	4 cut(s)	293, 461, 553, 579
BstFNI	CGCG	3 cut(s)	84, 97, 646
BstKTI	GATC	6 cut(s)	63, 101, 145, 180, 291, 619
BstMBI	GATC	6 cut(s)	60, 98, 142, 177, 288, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 403, 495
BstNI	CCWGG	1 cut(s)	709
BstSCI	CCNGG	3 cut(s)	707, 742, 743
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	3 cut(s)	84, 97, 646
BstV1I	GCAGC	1 cut(s)	418
BstX2I	RGATCY	3 cut(s)	60, 177, 288
BstYI	RGATCY	3 cut(s)	60, 177, 288
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	390, 629, 749
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	4 cut(s)	293, 461, 553, 579
BtuMI	TCGCGA	2 cut(s)	84, 97
Cac8I	GCNNGC	3 cut(s)	303, 641, 778
Cfr13I	GGNCC	2 cut(s)	54, 747
Cfr9I	CCCGGG	1 cut(s)	743
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CviAII	CATG	1 cut(s)	454
DdeI	CTNAG	2 cut(s)	246, 392
DpnI	GATC	6 cut(s)	62, 100, 144, 179, 290, 618
DpnII	GATC	6 cut(s)	60, 98, 142, 177, 288, 616
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Eco130I	CCWWGG	2 cut(s)	231, 430
Eco147I	AGGCCT	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	707
EcoT14I	CCWWGG	2 cut(s)	231, 430
ErhI	CCWWGG	2 cut(s)	231, 430
FaeI	CATG	1 cut(s)	457
FaiI	YATR	5 cut(s)	332, 455, 554, 656, 660
FatI	CATG	1 cut(s)	453
FauI	CCCGC	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	407, 410, 644
FokI	GGATG	4 cut(s)	280, 448, 560, 586
Fsp4HI	GCNGC	3 cut(s)	407, 410, 644
FspBI	CTAG	3 cut(s)	342, 383, 494
GluI	GCNGC	3 cut(s)	407, 410, 644
GsaI	CCCAGC	1 cut(s)	502
HaeIII	GGCC	3 cut(s)	390, 629, 749
HapII	CCGG	1 cut(s)	744
Hin1II	CATG	1 cut(s)	457
HincII	GTYRAC	2 cut(s)	27, 732
HindII	GTYRAC	2 cut(s)	27, 732
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	744
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	3 cut(s)	27, 380, 732
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	3 cut(s)	83, 96, 128
Hpy8I	GTNNAC	3 cut(s)	27, 380, 732
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	4 cut(s)	71, 119, 469, 736
HpyCH4V	TGCA	2 cut(s)	301, 406
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 403, 495
HpyF3I	CTNAG	2 cut(s)	246, 392
Hsp92II	CATG	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	6 cut(s)	60, 98, 142, 177, 288, 616
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	3 cut(s)	144, 355, 538
MaeI	CTAG	3 cut(s)	342, 383, 494
MalI	GATC	6 cut(s)	62, 100, 144, 179, 290, 618
MboI	GATC	6 cut(s)	60, 98, 142, 177, 288, 616
MboII	GAAGA	5 cut(s)	34, 137, 157, 589, 764
MflI	RGATCY	3 cut(s)	60, 177, 288
MhlI	GDGCHC	1 cut(s)	281
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	6 cut(s)	90, 188, 240, 366, 401, 556
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	589
MnlI	CCTC	6 cut(s)	114, 213, 387, 538, 696, 791
Mox20I	TGGCCA	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	716
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	4 cut(s)	207, 369, 651, 663
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	629
MspI	CCGG	1 cut(s)	744
MspR9I	CCNGG	3 cut(s)	709, 744, 745
Mva1269I	GAATGC	2 cut(s)	156, 607
MvaI	CCWGG	1 cut(s)	709
MvnI	CGCG	3 cut(s)	84, 97, 646
MwoI	GCNNNNNNNGC	3 cut(s)	311, 403, 495
NciI	CCSGG	2 cut(s)	744, 745
NdeII	GATC	6 cut(s)	60, 98, 142, 177, 288, 616
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	3 cut(s)	280, 706, 748
NmeAIII	GCCGAG	1 cut(s)	295
NruI	TCGCGA	2 cut(s)	84, 97
OliI	CACNNNNGTG	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	390
PctI	GAATGC	2 cut(s)	156, 607
PdmI	GAANNNNTTC	1 cut(s)	716
PkrI	GCNGC	3 cut(s)	408, 411, 645
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	707
PspFI	CCCAGC	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	707
PspN4I	GGNNCC	3 cut(s)	280, 706, 748
PspPI	GGNCC	2 cut(s)	54, 747
PsuI	RGATCY	3 cut(s)	60, 177, 288
RruI	TCGCGA	2 cut(s)	84, 97
RseI	CAYNNNNRTG	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	25
SaqAI	TTAA	4 cut(s)	207, 369, 651, 663
SatI	GCNGC	3 cut(s)	407, 410, 644
Sau3AI	GATC	6 cut(s)	60, 98, 142, 177, 288, 616
Sau96I	GGNCC	2 cut(s)	54, 747
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	3 cut(s)	709, 744, 745
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	7 cut(s)	106, 205, 252, 316, 432, 641, 778
SfaNI	GCATC	3 cut(s)	144, 355, 538
SinI	GGWCC	1 cut(s)	54
SmaI	CCCGGG	1 cut(s)	745
SmiMI	CAYNNNNRTG	1 cut(s)	72
SpeI	ACTAGT	1 cut(s)	382
Sse9I	AATT	6 cut(s)	90, 188, 240, 366, 401, 556
SseBI	AGGCCT	1 cut(s)	390
SsiI	CCGC	4 cut(s)	337, 410, 440, 644
SspMI	CTAG	3 cut(s)	342, 383, 494
StuI	AGGCCT	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	707, 742, 743
StyI	CCWWGG	2 cut(s)	231, 430
TaaI	ACNGT	4 cut(s)	71, 119, 469, 736
TaqI	TCGA	1 cut(s)	26
TasI	AATT	6 cut(s)	90, 188, 240, 366, 401, 556
TauI	GCSGC	2 cut(s)	412, 646
Tru1I	TTAA	4 cut(s)	207, 369, 651, 663
Tru9I	TTAA	4 cut(s)	207, 369, 651, 663
TseI	GCWGC	1 cut(s)	406
TspDTI	ATGAA	6 cut(s)	17, 212, 438, 530, 590, 614
TspGWI	ACGGA	1 cut(s)	158
TspMI	CCCGGG	1 cut(s)	743
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	3 cut(s)	90, 188, 556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmaI	CCCGGG	1 cut(s)	743
XmiI	GTMKAC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	716
XspI	CTAG	3 cut(s)	342, 383, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.