Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17314087 .. 17315951

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017476

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATTCTAGTCAATGTGCAGCGCGCTACAGACAAAGAAGTAAACCAGAACTTGATACAACACCTAAAAGCCTCCCTTTCTTGCACATTGAACATCTTCTACCCGCTTGCTGGCCACTTATCCCTCGTCGAAAACGAAGACAACACCACATGTTTCTACATCGACTGTAACGGAGTCGGAGCTCACTTTGTTCATGCTGCTGCGGATGGTATCAGGGTAGCCGATATTCTTGACCCCGTTTACATTCCTGATGAAATTGTGGACAACTTCTTTTCCATGAACTTGGTTCGAAACTATGAAGGGATTTCGAAACCATTGCTTGTGGCGCAAGTCACTGAGCTTGTTGATGGCATGTTTATCGGATGCAGCATAAACCACGCAGTTATGGACGGTACCTCTTTCTGGCATTTCTTCAATACTTGGTCTGAAATCTCTCGTTCTGGCTCTGATCATGATAAAGTAGCTTCTCAAATTAGTACTAGTAGTACTCCTGTTTTCGGTCGTCAATTTCTTGATGGCCTAATTGATCTCCCAGTTCACATTCCCTTCTCCCAAGTCCCAACTTCAAATCCCGGAGAAGCTAGTTCCACATACCACCTCTTCTTCCAATTACATACAAAGGGTGTTTCACTTCCCCAAAGAAAAAGTCGCCGCGCTCAAAGCAAAGGCCAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

226

Amino Acids

24.93

Weight (kDa)

5.74

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	14 - 168	2.8e-36	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccII	CGCG	2 cut(s)	24, 654
AciI	CCGC	3 cut(s)	104, 203, 652
AcoI	YGGCCR	1 cut(s)	112
AfaI	GTAC	3 cut(s)	394, 478, 487
AfiI	CCNNNNNNNGG	3 cut(s)	110, 402, 497
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	91, 415, 567
AhlI	ACTAGT	1 cut(s)	479
AluBI	AGCT	4 cut(s)	182, 340, 464, 581
AluI	AGCT	4 cut(s)	182, 340, 464, 581
Alw21I	GWGCWC	1 cut(s)	184
AoxI	GGCC	3 cut(s)	112, 517, 667
ApeKI	GCWGC	4 cut(s)	19, 197, 200, 366
ArsI	GACNNNNNNTTYG	2 cut(s)	631, 663
Asp700I	GAANNNNTTC	1 cut(s)	95
Asp718I	GGTACC	1 cut(s)	392
AspLEI	GCGC	4 cut(s)	24, 26, 328, 656
AsuC2I	CCSGG	1 cut(s)	573
AsuII	TTCGAA	2 cut(s)	289, 308
BalI	TGGCCA	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	4 cut(s)	31, 184, 187, 378
BccI	CCATC	3 cut(s)	200, 341, 509
BcgI	CGANNNNNNTGC	4 cut(s)	298, 332, 340, 374
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	573
BcuI	ACTAGT	1 cut(s)	479
BfaI	CTAG	3 cut(s)	8, 480, 582
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	5 cut(s)	20, 198, 201, 367, 652
BlsI	GCNGC	5 cut(s)	21, 199, 202, 368, 653
BmcAI	AGTACT	2 cut(s)	478, 487
Bme1390I	CCNGG	1 cut(s)	573
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	573
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	144
Bpu14I	TTCGAA	2 cut(s)	289, 308
BpuMI	CCSGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 402, 497
Bse1I	ACTGG	1 cut(s)	533
Bse3DI	GCAATG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	211, 368
BseLI	CCNNNNNNNGG	3 cut(s)	110, 402, 497
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	533
BsePI	GCGCGC	1 cut(s)	22
BseXI	GCAGC	4 cut(s)	31, 184, 187, 378
BsgI	GTGCAG	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	24, 654
Bsh1285I	CGRYCG	1 cut(s)	502
BshFI	GGCC	3 cut(s)	114, 519, 669
BshNI	GGYRCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	502
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	3 cut(s)	110, 402, 497
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	114, 519, 669
Bsp119I	TTCGAA	2 cut(s)	289, 308
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	448, 526
BspACI	CCGC	3 cut(s)	104, 203, 652
BspANI	GGCC	3 cut(s)	114, 519, 669
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	24, 654
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	394
BspT104I	TTCGAA	2 cut(s)	289, 308
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	533
BssHII	GCGCGC	1 cut(s)	22
BssMI	GATC	2 cut(s)	448, 526
Bst4CI	ACNGT	2 cut(s)	167, 392
Bst6I	CTCTTC	1 cut(s)	605
BstBI	TTCGAA	2 cut(s)	289, 308
BstC8I	GCNNGC	3 cut(s)	24, 108, 112
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	211, 368
BstFNI	CGCG	2 cut(s)	24, 654
BstHHI	GCGC	4 cut(s)	24, 26, 328, 656
BstKTI	GATC	2 cut(s)	451, 529
BstMBI	GATC	2 cut(s)	448, 526
BstMCI	CGRYCG	1 cut(s)	502
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 660
BstNSI	RCATGY	2 cut(s)	153, 355
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	2 cut(s)	24, 654
BstV1I	GCAGC	4 cut(s)	31, 184, 187, 378
BstV2I	GAAGAC	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	3 cut(s)	114, 519, 669
BtsCI	GGATG	2 cut(s)	211, 368
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	3 cut(s)	24, 108, 112
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	4 cut(s)	24, 26, 328, 656
Csp6I	GTAC	3 cut(s)	393, 477, 486
CviAII	CATG	5 cut(s)	150, 194, 277, 352, 452
CviQI	GTAC	3 cut(s)	393, 477, 486
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	450, 528
DpnII	GATC	2 cut(s)	448, 526
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	5 cut(s)	153, 197, 280, 355, 455
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	5 cut(s)	149, 193, 276, 351, 451
FauI	CCCGC	1 cut(s)	111
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	5 cut(s)	20, 198, 201, 367, 652
FokI	GGATG	2 cut(s)	218, 375
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	5 cut(s)	20, 198, 201, 367, 652
FspBI	CTAG	3 cut(s)	8, 480, 582
GlaI	GCGC	4 cut(s)	23, 25, 327, 655
GluI	GCNGC	5 cut(s)	20, 198, 201, 367, 652
HaeIII	GGCC	3 cut(s)	114, 519, 669
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	4 cut(s)	24, 26, 328, 656
Hin1II	CATG	5 cut(s)	153, 197, 280, 355, 455
Hin6I	GCGC	4 cut(s)	22, 24, 326, 654
HinP1I	GCGC	4 cut(s)	22, 24, 326, 654
HinfI	GANTC	2 cut(s)	4, 174
HpaII	CCGG	1 cut(s)	573
Hpy166II	GTNNAC	4 cut(s)	43, 241, 262, 538
Hpy188I	TCNGA	5 cut(s)	179, 362, 427, 448, 677
Hpy188III	TCNNGA	4 cut(s)	230, 248, 452, 512
Hpy8I	GTNNAC	4 cut(s)	43, 241, 262, 538
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	293, 556
HpyCH4III	ACNGT	2 cut(s)	167, 392
HpyCH4V	TGCA	3 cut(s)	19, 84, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 660
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	5 cut(s)	153, 197, 280, 355, 455
HspAI	GCGC	4 cut(s)	22, 24, 326, 654
KpnI	GGTACC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	448, 526
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	9 cut(s)	59, 96, 199, 261, 388, 426, 504, 546, 586
Lsp1109I	GCAGC	4 cut(s)	31, 184, 187, 378
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	3 cut(s)	8, 480, 582
MaeIII	GTNAC	2 cut(s)	167, 331
MalI	GATC	2 cut(s)	450, 528
MboI	GATC	2 cut(s)	448, 526
MboII	GAAGA	5 cut(s)	88, 149, 403, 592, 595
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	5 cut(s)	255, 471, 506, 522, 608
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	4 cut(s)	82, 134, 406, 608
Mox20I	TGGCCA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	573
MvnI	CGCG	2 cut(s)	24, 654
MwoI	GCNNNNNNNGC	2 cut(s)	325, 660
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	2 cut(s)	448, 526
NlaIII	CATG	5 cut(s)	153, 197, 280, 355, 455
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	2 cut(s)	153, 355
NspV	TTCGAA	2 cut(s)	289, 308
PagI	TCATGA	1 cut(s)	451
PauI	GCGCGC	1 cut(s)	22
PciI	ACATGT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	5 cut(s)	21, 199, 202, 368, 653
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PscI	ACATGT	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	394
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PteI	GCGCGC	1 cut(s)	22
RsaI	GTAC	3 cut(s)	394, 478, 487
RsaNI	GTAC	3 cut(s)	393, 477, 486
SacI	GAGCTC	1 cut(s)	184
SatI	GCNGC	5 cut(s)	20, 198, 201, 367, 652
Sau3AI	GATC	2 cut(s)	448, 526
ScaI	AGTACT	2 cut(s)	478, 487
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	7 cut(s)	66, 184, 342, 398, 466, 583, 600
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	1 cut(s)	27
SfuI	TTCGAA	2 cut(s)	289, 308
SpeI	ACTAGT	1 cut(s)	479
Sse9I	AATT	5 cut(s)	255, 471, 506, 522, 608
SsiI	CCGC	3 cut(s)	104, 203, 652
SspMI	CTAG	3 cut(s)	8, 480, 582
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	167, 392
TaqI	TCGA	4 cut(s)	129, 162, 289, 308
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	5 cut(s)	255, 471, 506, 522, 608
TatI	WGTACW	2 cut(s)	476, 485
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	4 cut(s)	19, 197, 200, 366
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	182, 267, 293, 312
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	340
XceI	RCATGY	2 cut(s)	153, 355
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	3 cut(s)	8, 480, 582
ZrmI	AGTACT	2 cut(s)	478, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.