Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000375

Physical Location & Seq

Genomic Coordinates Reverse (-)

19219235 .. 19220015

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGCACCACCAAGATCTCATCCTTACAAGCACTCTTGGCTCATCTTTGGGTTTCCATAACCCGCACCGGGCATCTCAACCCCGACCAAGAAATCAAATATTGCTTACTAGTAGGCCTGAGGCAAAGATTGCAGCCGCCATTACCCGATGAATACCTTGGCAATGCGGTTCTTTTTGGCACGGTCACATCCACCGTGAGCGATTTGCTCAACCGCGGACTAGGCTGGGTGGCTTTGGAAATGAACAAGATGATTGCTTCAAAGACGAAAGAGGATGCTATAAATTTTTTGAAGCAATGGAAAGAGAGTCCAAAACTAGCCAAAATGAATGCTTTCGCAAGTGATCAAGCATTAGGCACGGGAAGCTCGCCGCGGTTCAATGTGTATGGTAACAACTTTGGTTGGGGAAGTCCTCTGGCAGTTAGAAGTGGTGCCGGGAACAAGTTCGATGGGAAGTTGACGGTGTTTCCCGGGGCTGAAGATGGAAGCATTGATTTTGAAGCTTGCCTCTCGCCGCAGACGCTGCAAGCTTTGGCGGAGGACGAAGAGTTCATGGCTAGTGTGGCTTGTTCTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

194

Amino Acids

20.84

Weight (kDa)

5.7

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50270 AT3G50280 AT3G50280 AT3G50290 AT3G50300 AT5G38130 AT5G67150
fragaria_vesca	FvH4_1g16271 FvH4_1g16300 FvH4_1g16301 FvH4_1g16304 FvH4_1g16321
malus_domestica	MD02G1175300.v1.1 MD02G1175400.v1.1 MD02G1175500.v1.1 MD02G1175700.v1.1 MD03G1116500.v1.1 MD04G1188300.v1.1 MD08G1137000.v1.1 MD15G1286000.v1.1 MD15G1286100.v1.1 MD15G1286200.v1.1 MD17G1197100.v1.1
prunus_persica	Prupe.7G129900_v2.0.a1 Prupe.7G130000_v2.0.a1 Prupe.7G130100_v2.0.a1 Prupe.7G130200_v2.0.a1 Prupe.7G130300_v2.0.a1 Prupe.7G130400_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130500_v2.0.a1 Prupe.7G130600_v2.0.a1 Prupe.7G130700_v2.0.a1 Prupe.7G130800_v2.0.a1
pyrus_communis	pycom02g14140 pycom02g14150 pycom15g24910 pycom17g20220
rosa_chinensis	RchiOBHm_Chr2g0105981 RchiOBHm_Chr2g0106021 RchiOBHm_Chr2g0106071 RchiOBHm_Chr2g0106091 RchiOBHm_Chr2g0106111 RchiOBHm_Chr2g0106181 RchiOBHm_Chr2g0106441
rosa_laevigata	RLG00000000204 RLG00000000206 RLG00000000207 RLG00000000208 RLG00000017475 RLG00000017476 RLG00000017477 RLG00000017479 RLG00000017498
rosa_multiflora	Rmu_co8282453.1_g000001 Rmu_sc0000444.1_g000002 Rmu_sc0000608.1_g000005 Rmu_sc0004015.1_g000005 Rmu_sc0008303.1_g000013 Rmu_sc0009027.1_g000012 Rmu_sc0010662.1_g000004 Rmu_sc0014348.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137180 Rroxscaffold_2G00137400 Rroxscaffold_2G00137420 Rroxscaffold_2G00137440 Rroxscaffold_2G00137460 Rroxscaffold_2G00137490 Rroxscaffold_2G00137610 Rroxscaffold_2G00137630 Rroxscaffold_2G00137650
rosa_rugosa	Rorug02G0132900 Rorug02G0133000 Rorug02G0133100 Rorug02G0133200 Rorug02G0135400
rosa_samantha	Rh2AG183800 Rh2AG184000 Rh2AG184100 Rh2AG184200 Rh2AG186700 Rh2AG186800 Rh2BG193500 Rh2BG193700 Rh2BG193900 Rh2BG194000 Rh2BG194200 Rh2BG197000 Rh2BG197200 Rh2CG187700 Rh2CG188100 Rh2CG188500 Rh2CG188600 Rh2CG188700 Rh2CG189100 Rh2CG191800 Rh2DG190200 Rh2DG190400 Rh2DG190500 Rh2DG190600 Rh2DG192800 Rh2DG193000
rosa_wichuraiana	Rw2G014370 Rw2G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	5, 431
AccII	CGCG	2 cut(s)	216, 373
AciI	CCGC	9 cut(s)	64, 137, 167, 214, 216, 371, 373, 515, 536
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	261, 292, 379, 500
AhlI	ACTAGT	1 cut(s)	109
AloI	GAACNNNNNNTCC	2 cut(s)	533, 565
AluBI	AGCT	3 cut(s)	366, 503, 530
AluI	AGCT	3 cut(s)	366, 503, 530
AlwNI	CAGNNNCTG	1 cut(s)	523
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	133, 523
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	2 cut(s)	332, 443
AsuC2I	CCSGG	4 cut(s)	70, 436, 471, 472
AvaI	CYCGRG	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	2 cut(s)	5, 431
BbvI	GCAGC	2 cut(s)	145, 510
BccI	CCATC	2 cut(s)	443, 476
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	4 cut(s)	70, 436, 471, 472
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	4 cut(s)	110, 221, 317, 558
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	5 cut(s)	134, 137, 371, 515, 524
BlsI	GCNGC	5 cut(s)	135, 138, 372, 516, 525
Bme1390I	CCNGG	4 cut(s)	70, 436, 471, 472
BmeT110I	CYCGRG	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	7, 433
BmrFI	CCNGG	4 cut(s)	70, 436, 471, 472
BmsI	GCATC	2 cut(s)	82, 265
BpuMI	CCSGG	4 cut(s)	70, 436, 471, 472
BsaJI	CCNNGG	5 cut(s)	157, 214, 371, 470, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse21I	CCTNAGG	1 cut(s)	119
Bse3DI	GCAATG	2 cut(s)	169, 302
BseDI	CCNNGG	5 cut(s)	157, 214, 371, 470, 471
BseGI	GGATG	3 cut(s)	20, 188, 280
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	2 cut(s)	169, 302
BseMII	CTCAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	145, 510
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	2 cut(s)	216, 373
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	2 cut(s)	5, 431
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	3 cut(s)	69, 435, 471
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	15, 343
BspACI	CCGC	9 cut(s)	64, 137, 167, 214, 216, 371, 373, 515, 536
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	111
BspFNI	CGCG	2 cut(s)	216, 373
BspLI	GGNNCC	2 cut(s)	7, 433
BspT107I	GGYRCC	2 cut(s)	5, 431
BsrDI	GCAATG	2 cut(s)	169, 302
BssECI	CCNNGG	5 cut(s)	157, 214, 371, 470, 471
BssMI	GATC	2 cut(s)	15, 343
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	3 cut(s)	184, 196, 463
Bst6I	CTCTTC	1 cut(s)	540
BstAPI	GCANNNNNTGC	2 cut(s)	130, 523
BstC8I	GCNNGC	3 cut(s)	368, 505, 528
BstDEI	CTNAG	1 cut(s)	119
BstDSI	CCRYGG	2 cut(s)	214, 371
BstF5I	GGATG	3 cut(s)	20, 188, 280
BstFNI	CGCG	2 cut(s)	216, 373
BstKTI	GATC	2 cut(s)	18, 346
BstMBI	GATC	2 cut(s)	15, 343
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 130, 222, 363, 520, 523, 563
BstSCI	CCNGG	4 cut(s)	68, 434, 469, 470
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	2 cut(s)	216, 373
BstV1I	GCAGC	2 cut(s)	145, 510
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	2 cut(s)	214, 371
BtsCI	GGATG	3 cut(s)	20, 188, 280
Cac8I	GCNNGC	3 cut(s)	368, 505, 528
CaiI	CAGNNNCTG	1 cut(s)	523
Cfr42I	CCGCGG	2 cut(s)	217, 374
Cfr9I	CCCGGG	1 cut(s)	470
CseI	GACGC	1 cut(s)	529
CviAII	CATG	1 cut(s)	553
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	2 cut(s)	17, 345
DpnII	GATC	2 cut(s)	15, 343
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	498
Eco81I	CCTNAGG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	556
FaiI	YATR	4 cut(s)	59, 281, 387, 554
FatI	CATG	1 cut(s)	552
FauI	CCCGC	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	5 cut(s)	134, 137, 371, 515, 524
FokI	GGATG	3 cut(s)	7, 175, 287
Fsp4HI	GCNGC	5 cut(s)	134, 137, 371, 515, 524
FspBI	CTAG	4 cut(s)	110, 221, 317, 558
GluI	GCNGC	5 cut(s)	134, 137, 371, 515, 524
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	3 cut(s)	69, 435, 471
HgaI	GACGC	1 cut(s)	529
Hin1II	CATG	1 cut(s)	556
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HindIII	AAGCTT	2 cut(s)	501, 528
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	3 cut(s)	69, 435, 471
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188III	TCNNGA	1 cut(s)	573
Hpy8I	GTNNAC	1 cut(s)	459
HpyCH4III	ACNGT	3 cut(s)	184, 196, 463
HpyCH4V	TGCA	2 cut(s)	133, 526
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 130, 222, 363, 520, 523, 563
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	556
Ksp22I	TGATCA	1 cut(s)	343
KspI	CCGCGG	2 cut(s)	217, 374
Kzo9I	GATC	2 cut(s)	15, 343
LpnPI	CCDG	7 cut(s)	82, 131, 211, 401, 448, 484, 558
Lsp1109I	GCAGC	2 cut(s)	145, 510
LweI	GCATC	2 cut(s)	82, 265
MaeI	CTAG	4 cut(s)	110, 221, 317, 558
MaeIII	GTNAC	2 cut(s)	184, 389
MalI	GATC	2 cut(s)	17, 345
MboI	GATC	2 cut(s)	15, 343
MboII	GAAGA	2 cut(s)	491, 557
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	283, 577
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	5 cut(s)	114, 265, 423, 518, 532
MroXI	GAANNNNTTC	2 cut(s)	332, 443
MseI	TTAA	1 cut(s)	580
MspA1I	CMGCKG	2 cut(s)	216, 373
MspI	CCGG	3 cut(s)	69, 435, 471
MspR9I	CCNGG	4 cut(s)	70, 436, 471, 472
Mva1269I	GAATGC	1 cut(s)	334
MvnI	CGCG	2 cut(s)	216, 373
MwoI	GCNNNNNNNGC	7 cut(s)	38, 130, 222, 363, 520, 523, 563
NciI	CCSGG	4 cut(s)	70, 436, 471, 472
NdeII	GATC	2 cut(s)	15, 343
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	2 cut(s)	7, 433
NmuCI	GTSAC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	117
PctI	GAATGC	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	332, 443
PkrI	GCNGC	5 cut(s)	135, 138, 372, 516, 525
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	7, 433
PstNI	CAGNNNCTG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	15
SacII	CCGCGG	2 cut(s)	217, 374
SaqAI	TTAA	1 cut(s)	580
SatI	GCNGC	5 cut(s)	134, 137, 371, 515, 524
Sau3AI	GATC	2 cut(s)	15, 343
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	4 cut(s)	70, 436, 471, 472
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	159, 368, 505, 532
SfaNI	GCATC	2 cut(s)	82, 265
Sfr303I	CCGCGG	2 cut(s)	217, 374
SgrBI	CCGCGG	2 cut(s)	217, 374
SmaI	CCCGGG	1 cut(s)	472
SpeI	ACTAGT	1 cut(s)	109
Sse9I	AATT	2 cut(s)	283, 577
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	9 cut(s)	64, 137, 167, 214, 216, 371, 373, 515, 536
SspI	AATATT	1 cut(s)	101
SspMI	CTAG	4 cut(s)	110, 221, 317, 558
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	4 cut(s)	68, 434, 469, 470
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	3 cut(s)	184, 196, 463
TaqI	TCGA	1 cut(s)	447
TasI	AATT	2 cut(s)	283, 577
TauI	GCSGC	3 cut(s)	139, 373, 517
Tru1I	TTAA	1 cut(s)	580
Tru9I	TTAA	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	133, 523
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	4 cut(s)	165, 257, 341, 541
TspMI	CCCGGG	1 cut(s)	470
XapI	RAATTY	1 cut(s)	283
XmaI	CCCGGG	1 cut(s)	470
XmnI	GAANNNNTTC	2 cut(s)	332, 443
XspI	CTAG	4 cut(s)	110, 221, 317, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.