Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Reverse (-)

69983 .. 72217

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACGACCGGAGATCTCGTTAATATCCATCCTACTGAGCTTAAATTCCCCTTTGAGTTGAAGAAACAAAGTTCGTGTTCGATGCAATTGACCAACAAGACAACTACTCAATGTGTCGCTTTTAAGGTTAAAACAACCAATCCTCGCAAATACTGTGTTCGTCCTAACACTGGTGTTGTCTTGCCCGGTGATTCCTGCAATGTTACAGTGACGATGCAAGCCCAGAAAGAGGCACCACTTGATATGCAATGCAAAGACAAGTTCCTTGTTCAGACTGTTGTTGTCTCTGATGGTACTACTTCCAAAGAAGTCCTCGCTGAAATGTTCAACAAGGAGGCTGGTAGAGTGATTGAGGATTTCAAACTGCGAGTTGTTTACATTCCTGCTAATCCTCCTTCACCTGTCCCTGAAGGTTCTGAAGAAGGCAACTCTCCTATGGCTTCCCTCAACGATATTGCCTCTCAATCTGCCTCACTCTTTGATGACGTGTCAAGAACGTTTGAAGAAACAAGTGAGAAATCTTCAGAGGCATGGTCTATGATTTCCAAATTGACGGAGGAGAAGACTTCTGCTACTCAACAAAGTCAGAAGCTCCGTCTCGAACTGGAAATGCTGAGGAAAGAAACAAGCAAGAAGCAGTCGGGTGGTCATTCCTTGCTCTTGATGCTGCTGGTGGGTCTGCTCGGTTGCGTGATTGGCTACTTATTGAACCGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

239

Amino Acids

26.37

Weight (kDa)

6.75

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 113	6.8e-33	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AclI	AACGTT	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	3 cut(s)	429, 438, 507
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	170, 229
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	5 cut(s)	61, 328, 361, 503, 709
AjiI	CACGTC	1 cut(s)	487
AluBI	AGCT	2 cut(s)	40, 592
AluI	AGCT	2 cut(s)	40, 592
Alw26I	GTCTC	2 cut(s)	289, 602
ApeKI	GCWGC	1 cut(s)	667
ApoI	RAATTY	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	200, 390
BanI	GGYRCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	654
BccI	CCATC	2 cut(s)	36, 284
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	289, 602
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	1 cut(s)	668
BlsI	GCNGC	1 cut(s)	669
Bme1390I	CCNGG	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	3 cut(s)	72, 204, 654
BpiI	GAAGAC	1 cut(s)	569
Bpu10I	CCTNAGC	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	186
BsaWI	WCCGGW	2 cut(s)	8, 711
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 229
Bse1I	ACTGG	2 cut(s)	175, 609
Bse3DI	GCAATG	2 cut(s)	205, 254
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	170, 229
BseMI	GCAATG	2 cut(s)	205, 254
BseMII	CTCAG	2 cut(s)	27, 605
BseNI	ACTGG	2 cut(s)	175, 609
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	654
Bsh1285I	CGRYCG	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	232
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	9, 186, 712
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	170, 229
BsmAI	GTCTC	2 cut(s)	289, 602
BsmBI	CGTCTC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	13
BspCNI	CTCAG	2 cut(s)	28, 606
BspLI	GGNNCC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	205, 254
BsrI	ACTGG	2 cut(s)	175, 609
BssMI	GATC	1 cut(s)	13
Bst4CI	ACNGT	3 cut(s)	155, 208, 277
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	36, 614
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	2 cut(s)	289, 602
BstMBI	GATC	1 cut(s)	13
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	664, 696
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	654
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	168, 213
Cac8I	GCNNGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	1 cut(s)	531
CviJI	RGCY	6 cut(s)	40, 221, 338, 440, 592, 699
CviKI_1	RGCY	6 cut(s)	40, 221, 338, 440, 592, 699
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	2 cut(s)	36, 614
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eco57I	CTGAAG	3 cut(s)	429, 438, 507
Esp3I	CGTCTC	1 cut(s)	602
FaeI	CATG	1 cut(s)	534
FaiI	YATR	5 cut(s)	245, 437, 532, 539, 718
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	1 cut(s)	530
Fnu4HI	GCNGC	1 cut(s)	668
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	668
GluI	GCNGC	1 cut(s)	668
HapII	CCGG	3 cut(s)	9, 186, 712
Hin1II	CATG	1 cut(s)	534
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	3 cut(s)	9, 186, 712
HphI	GGTGA	2 cut(s)	200, 390
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	5 cut(s)	273, 289, 418, 526, 588
Hpy188III	TCNNGA	3 cut(s)	492, 599, 661
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	3 cut(s)	404, 405, 416
HpyCH4III	ACNGT	3 cut(s)	155, 208, 277
HpyCH4IV	ACGT	2 cut(s)	486, 497
HpyCH4V	TGCA	5 cut(s)	85, 198, 217, 247, 252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	664, 696
HpyF3I	CTNAG	2 cut(s)	36, 614
HpySE526I	ACGT	2 cut(s)	486, 497
Hsp92II	CATG	1 cut(s)	534
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	597
Lsp1109I	GCAGC	1 cut(s)	654
LweI	GCATC	3 cut(s)	72, 204, 654
MaeII	ACGT	2 cut(s)	486, 497
MaeIII	GTNAC	2 cut(s)	202, 208
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	5 cut(s)	73, 431, 513, 515, 574
MfeI	CAATTG	1 cut(s)	86
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	3 cut(s)	44, 86, 548
MseI	TTAA	4 cut(s)	21, 42, 123, 129
MspI	CCGG	3 cut(s)	9, 186, 712
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	664, 696
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	669
Psp1406I	AACGTT	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SaqAI	TTAA	4 cut(s)	21, 42, 123, 129
SatI	GCNGC	1 cut(s)	668
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	7 cut(s)	42, 129, 403, 415, 489, 500, 594
SfaNI	GCATC	3 cut(s)	72, 204, 654
Sse9I	AATT	3 cut(s)	44, 86, 548
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	155, 208, 277
TaiI	ACGT	2 cut(s)	489, 500
TaqI	TCGA	2 cut(s)	80, 600
TasI	AATT	3 cut(s)	44, 86, 548
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	4 cut(s)	21, 42, 123, 129
Tru9I	TTAA	4 cut(s)	21, 42, 123, 129
TscAI	CASTG	2 cut(s)	175, 213
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	667
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	2 cut(s)	569, 584
TspRI	CASTG	2 cut(s)	175, 213
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.