Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Forward (+)

6673750 .. 6675058

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGCACAGGCGAGCTTCTCAGCATCGAGCCTCTGGAGCTCAAGTTCCCCTTCGAGTTGAAGAAGCAGATCTCCTGTTCGCTCCAGCTCTCGAATAAGACCGATAGCTATGTCGCCTTCAAGGTCAAAACTACGAACCCGAAGAAGTATTGTGTTCGTCCGAACACCGGAGTTGTCTTGCCTCGATCCACATGTCATGTTATAGTTACAATGCAAGCCCAAAAAGAGGCTCCTCCGGACATGCAATGTAAGGACAAGTTCCTTCTCCAGAGTGTAAAAACTAACGATGGTGCAACGACAAAGGATGTTACTCCTGAAGTGTTCAATAAAGAGGCGGGACATGTGGTTGAGGAGTGCAAATTGAGAGTGGTATATGTTCCTCCACCTCAACCCCCTTCTCCGGTTCCAGAAGGTTCAGAAGAAGGGTCTTCACCAAGGGTTTCTGCTACAGAGAATGGAAACGTGAACATTTCTGAGTTTTCCAATGCTGCAAAAGCATTTACTGAGCTTGAACCTCAGGAGAGATCTGCAGAGGTACAACATTATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

184

Amino Acids

20.19

Weight (kDa)

5.97

Isoelectric Point (pI)

64.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	3 cut(s)	167, 226, 400
AflIII	ACRYGT	2 cut(s)	191, 340
AgsI	TTSAA	4 cut(s)	61, 121, 325, 512
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	5 cut(s)	16, 40, 88, 108, 508
AluI	AGCT	5 cut(s)	16, 40, 88, 108, 508
Alw21I	GWGCWC	2 cut(s)	8, 42
AlwI	GGATC	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	423
AxyI	CCTNAGG	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	8, 42
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	1 cut(s)	281
BfmI	CTRYAG	2 cut(s)	447, 528
BglII	AGATCT	2 cut(s)	69, 524
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	231, 405
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	3 cut(s)	56, 68, 251
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	3 cut(s)	167, 235, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 226, 400
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	251
BseAI	TCCGGA	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	167, 226, 400
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	4 cut(s)	34, 465, 495, 530
BseRI	GAGGAG	2 cut(s)	222, 365
BseXI	GCAGC	1 cut(s)	475
BsiHKAI	GWGCWC	2 cut(s)	8, 42
BsiSI	CCGG	3 cut(s)	168, 236, 401
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	3 cut(s)	167, 226, 400
BsmFI	GGGAC	1 cut(s)	351
Bsp1286I	GDGCHC	2 cut(s)	8, 42
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	69, 185, 524
BspACI	CCGC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	33, 466, 496, 529
BspEI	TCCGGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	231, 405
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	3 cut(s)	69, 185, 524
BssT1I	CCWWGG	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	14, 216
BstDEI	CTNAG	4 cut(s)	20, 474, 504, 516
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	72, 188, 527
BstMBI	GATC	3 cut(s)	69, 185, 524
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 494
BstNSI	RCATGY	3 cut(s)	195, 244, 344
BstSFI	CTRYAG	2 cut(s)	447, 528
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	69, 524
BstYI	RGATCY	2 cut(s)	69, 524
Bsu36I	CCTNAGG	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	14, 216
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	4 cut(s)	192, 197, 241, 341
CviJI	RGCY	8 cut(s)	16, 31, 40, 88, 108, 218, 230, 508
CviKI_1	RGCY	8 cut(s)	16, 31, 40, 88, 108, 218, 230, 508
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	4 cut(s)	20, 474, 504, 516
DpnI	GATC	3 cut(s)	71, 187, 526
DpnII	GATC	3 cut(s)	69, 185, 524
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	4 cut(s)	195, 200, 244, 344
FaiI	YATR	9 cut(s)	111, 193, 198, 203, 242, 342, 373, 375, 546
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	4 cut(s)	191, 196, 240, 340
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	489
GluI	GCNGC	1 cut(s)	489
GsuI	CTGGAG	3 cut(s)	56, 68, 251
HapII	CCGG	3 cut(s)	168, 236, 401
Hin1II	CATG	4 cut(s)	195, 200, 244, 344
HpaII	CCGG	3 cut(s)	168, 236, 401
HphI	GGTGA	1 cut(s)	423
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	4 cut(s)	162, 418, 475, 551
Hpy188III	TCNNGA	7 cut(s)	35, 91, 236, 268, 314, 407, 518
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	6 cut(s)	61, 127, 272, 404, 405, 416
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	6 cut(s)	214, 244, 293, 357, 491, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 494
HpyF3I	CTNAG	4 cut(s)	20, 474, 504, 516
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	4 cut(s)	195, 200, 244, 344
Kpn2I	TCCGGA	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	69, 185, 524
LmnI	GCTCC	3 cut(s)	37, 87, 235
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	205, 307
MalI	GATC	3 cut(s)	71, 187, 526
MboI	GATC	3 cut(s)	69, 185, 524
MboII	GAAGA	4 cut(s)	73, 154, 420, 431
MflI	RGATCY	2 cut(s)	69, 524
MhlI	GDGCHC	2 cut(s)	8, 42
MluCI	AATT	1 cut(s)	359
MroI	TCCGGA	1 cut(s)	235
MspI	CCGG	3 cut(s)	168, 236, 401
MwoI	GCNNNNNNNGC	2 cut(s)	37, 494
NdeII	GATC	3 cut(s)	69, 185, 524
NlaIII	CATG	4 cut(s)	195, 200, 244, 344
NlaIV	GGNNCC	2 cut(s)	231, 405
NspI	RCATGY	3 cut(s)	195, 244, 344
PciI	ACATGT	2 cut(s)	191, 340
PkrI	GCNGC	1 cut(s)	490
PscI	ACATGT	2 cut(s)	191, 340
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	231, 405
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	2 cut(s)	69, 524
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	42
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	3 cut(s)	69, 185, 524
SduI	GDGCHC	2 cut(s)	8, 42
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	2 cut(s)	447, 528
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	434
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	4 cut(s)	27, 54, 92, 184
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	359
TseI	GCWGC	1 cut(s)	488
XceI	RCATGY	3 cut(s)	195, 244, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.