Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Reverse (-)

8268149 .. 8269731

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0061900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGAGTTGGTGGTGGGCAGGAGCCATAGGAGCTGCAAAGAAAAAGTTTGATCCAGACGATGCACCTGCCAAGTACCAGAGCGTGGCCCTCGTACTTGGGGTCACCGGACTCGTCGGAAACAGCCTCGCCGAGATTCTTCCACTGCCCGACACTCCCGGCGGGCCGTGGAAGGTCTACGGAGTGGCCCGGCGGCCCCGGCCACAGTGGAACGCTGACCACCCGATTCAGTACATCCAGTGTGACCTCTTAGACTCCAAACAGACAGAGGCAGAGCTCTCCCAGCTCACTGATGTCACTCACATTTTTTATGTCACATGGGCGAGCAAGCCAACTGAAGCTGAGAACTGTGAGGCTAATGGCAAGATGTTAAGCAATGTGTTGAATGCTGTGATCCCAAACGCGCCGAATTTGCAGCACATATGTATGCAGACGGGTCGGAAGCACTACTTAGGTTCGTTTGAGATGTTGGGGAAAGTCCAACCCCATGAACCTCCATATCACGAAGACCTGCCGAGGCTTAATGCCCCCAATTTTTACTATGTGATGGAGGATATTCTGTTTGAGGAGGTGAAGAAGAAGGAGGGGCTGACATGGTCTGTGCACAGGCCGGGAACCATATGCGGGTTCTCACCGTATAGCTTGATGAATATGATTGGGAGTTTGTGTGTTTACGCTGCGATTTGTAAGCATGAAGGGCAGCCGTTGAGGTTTCCGGGGAGTAAAGGAACTTGGGAAGGGTTCTGGGACGTGTCTGATGCGGATATGATTGCTGAACATCAGATATGGGCAGCTGTGGAGCCTTATGCCAAGAATGAAACTTTTAATTGTAGCAACGGGGATGTGTTCAAGTGGAAGCATTTGTGGGGGATTCTGGCCGAGCAGTTCGAGCTAGTGCCTGCTGGACTTCAGGAGGAGTTGAGTTTTGAGGAGATGATGAAAGATAAAGGGCCAGTGTGGGATGAAATTGTAAGAGAGCATGGTTTGGTGCCTACCAAATTGGAAGAGGTAGGGAACTGGTGGTTTCTGGACATTATGTTTCAGGTTGATTCAACTGTGGACAGTATGAACAAGAGCAAAGAGCATGGTTTTGTTGGCTTTAGGAACTCGAAAACTTCCTTTGTTTCTTGGATTGACAAGATGAAGTCTTTTAGAATTGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

387

Amino Acids

43.89

Weight (kDa)

5.42

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRISE	PF22917	29 - 387	6.8e-26	PRISE-like Rossmann-fold domain
Epimerase	PF01370	29 - 252	2.2e-09	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	73
Acc36I	ACCTGC	2 cut(s)	73, 516
AccB1I	GGYRCC	1 cut(s)	985
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	1 cut(s)	401
AciI	CCGC	4 cut(s)	159, 190, 621, 758
AclWI	GGATC	2 cut(s)	44, 385
AcoI	YGGCCR	2 cut(s)	197, 873
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	2 cut(s)	354, 890
AfaI	GTAC	3 cut(s)	74, 93, 230
AfiI	CCNNNNNNNGG	2 cut(s)	82, 621
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	3 cut(s)	382, 847, 1050
AjiI	CACGTC	1 cut(s)	748
AluBI	AGCT	7 cut(s)	32, 274, 283, 338, 639, 791, 889
AluI	AGCT	7 cut(s)	32, 274, 283, 338, 639, 791, 889
Alw21I	GWGCWC	2 cut(s)	276, 603
Alw44I	GTGCAC	1 cut(s)	599
AlwI	GGATC	2 cut(s)	44, 385
AoxI	GGCC	8 cut(s)	84, 161, 183, 191, 197, 605, 873, 947
ApaLI	GTGCAC	1 cut(s)	599
ApeKI	GCWGC	5 cut(s)	32, 412, 674, 697, 788
ApoI	RAATTY	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	5 cut(s)	85, 161, 184, 192, 947
AsuC2I	CCSGG	5 cut(s)	156, 187, 196, 609, 714
AsuHPI	GGTGA	3 cut(s)	94, 580, 621
BaeGI	GKGCMC	1 cut(s)	603
BanI	GGYRCC	1 cut(s)	985
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	2 cut(s)	276, 603
BbvI	GCAGC	5 cut(s)	19, 424, 661, 709, 800
BccI	CCATC	1 cut(s)	538
BceAI	ACGGC	2 cut(s)	148, 685
BcgI	CGANNNNNNTGC	4 cut(s)	47, 81, 416, 450
BcnI	CCSGG	5 cut(s)	156, 187, 196, 609, 714
BfaI	CTAG	1 cut(s)	890
BfuAI	ACCTGC	2 cut(s)	73, 516
BisI	GCNGC	6 cut(s)	33, 191, 413, 675, 698, 789
BlsI	GCNGC	6 cut(s)	34, 192, 414, 676, 699, 790
Bme1390I	CCNGG	5 cut(s)	156, 187, 196, 609, 714
BmgBI	CACGTC	1 cut(s)	748
BmgT120I	GGNCC	5 cut(s)	85, 161, 184, 192, 947
BmiI	GGNNCC	5 cut(s)	22, 194, 613, 798, 987
BmrFI	CCNGG	5 cut(s)	156, 187, 196, 609, 714
BmsI	GCATC	2 cut(s)	49, 745
BpiI	GAAGAC	1 cut(s)	510
BpuMI	CCSGG	5 cut(s)	156, 187, 196, 609, 714
BsaJI	CCNNGG	4 cut(s)	164, 194, 512, 713
BsaWI	WCCGGW	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	649, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 621
Bse1I	ACTGG	3 cut(s)	235, 950, 1019
Bse3DI	GCAATG	1 cut(s)	379
BseDI	CCNNGG	4 cut(s)	164, 194, 512, 713
BseGI	GGATG	3 cut(s)	231, 844, 964
BseLI	CCNNNNNNNGG	2 cut(s)	82, 621
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	235, 950, 1019
BseRI	GAGGAG	3 cut(s)	578, 926, 941
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	5 cut(s)	19, 424, 661, 709, 800
BseYI	CCCAGC	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	8 cut(s)	86, 163, 185, 193, 199, 607, 875, 949
BshNI	GGYRCC	1 cut(s)	985
BsiHKAI	GWGCWC	2 cut(s)	276, 603
BsiSI	CCGG	6 cut(s)	105, 156, 187, 196, 608, 713
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	82, 621
BsmFI	GGGAC	1 cut(s)	758
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	8 cut(s)	86, 163, 185, 193, 199, 607, 875, 949
Bsp1286I	GDGCHC	2 cut(s)	276, 603
Bsp143I	GATC	2 cut(s)	49, 390
BspACI	CCGC	4 cut(s)	159, 190, 621, 758
BspANI	GGCC	8 cut(s)	86, 163, 185, 193, 199, 607, 875, 949
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	5 cut(s)	22, 194, 613, 798, 987
BspMI	ACCTGC	2 cut(s)	73, 516
BspPI	GGATC	2 cut(s)	44, 385
BspT107I	GGYRCC	1 cut(s)	985
BsrDI	GCAATG	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	235, 950, 1019
BssECI	CCNNGG	4 cut(s)	164, 194, 512, 713
BssMI	GATC	2 cut(s)	49, 390
Bst4CI	ACNGT	5 cut(s)	204, 347, 633, 1054, 1061
Bst6I	CTCTTC	1 cut(s)	996
BstC8I	GCNNGC	4 cut(s)	161, 322, 326, 897
BstDEI	CTNAG	3 cut(s)	247, 339, 448
BstDSI	CCRYGG	1 cut(s)	164
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	231, 844, 964
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	2 cut(s)	52, 393
BstMBI	GATC	2 cut(s)	49, 390
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 196, 280, 409, 694, 886
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	5 cut(s)	154, 185, 194, 607, 712
BstSLI	GKGCMC	1 cut(s)	603
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	5 cut(s)	19, 424, 661, 709, 800
BstV2I	GAAGAC	1 cut(s)	510
BsuRI	GGCC	8 cut(s)	86, 163, 185, 193, 199, 607, 875, 949
BtgI	CCRYGG	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	748
BtsCI	GGATG	3 cut(s)	231, 844, 964
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	5 cut(s)	140, 209, 242, 285, 957
BveI	ACCTGC	2 cut(s)	73, 516
Cac8I	GCNNGC	4 cut(s)	161, 322, 326, 897
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	5 cut(s)	85, 161, 184, 192, 947
Csp6I	GTAC	3 cut(s)	73, 92, 229
CviAII	CATG	6 cut(s)	315, 485, 591, 689, 977, 1082
CviQI	GTAC	3 cut(s)	73, 92, 229
DdeI	CTNAG	3 cut(s)	247, 339, 448
DpnI	GATC	2 cut(s)	51, 392
DpnII	GATC	2 cut(s)	49, 390
EaeI	YGGCCR	2 cut(s)	197, 873
Eam1104I	CTCTTC	1 cut(s)	996
EarI	CTCTTC	1 cut(s)	996
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	2 cut(s)	354, 890
Eco91I	GGTNACC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	276
FaeI	CATG	6 cut(s)	318, 488, 594, 692, 980, 1085
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	6 cut(s)	314, 484, 590, 688, 976, 1081
FauI	CCCGC	2 cut(s)	152, 614
FauNDI	CATATG	2 cut(s)	419, 617
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	33, 191, 413, 675, 698, 789
FokI	GGATG	3 cut(s)	218, 851, 971
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	6 cut(s)	33, 191, 413, 675, 698, 789
FspBI	CTAG	1 cut(s)	890
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	6 cut(s)	33, 191, 413, 675, 698, 789
GsaI	CCCAGC	1 cut(s)	283
HaeIII	GGCC	8 cut(s)	86, 163, 185, 193, 199, 607, 875, 949
HapII	CCGG	6 cut(s)	105, 156, 187, 196, 608, 713
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	6 cut(s)	318, 488, 594, 692, 980, 1085
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	6 cut(s)	108, 133, 223, 251, 868, 1046
HpaII	CCGG	6 cut(s)	105, 156, 187, 196, 608, 713
HphI	GGTGA	3 cut(s)	94, 580, 621
Hpy166II	GTNNAC	4 cut(s)	175, 601, 670, 1057
Hpy188I	TCNGA	4 cut(s)	116, 438, 754, 780
Hpy188III	TCNNGA	4 cut(s)	53, 500, 908, 1025
Hpy8I	GTNNAC	4 cut(s)	175, 601, 670, 1057
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	163, 571, 686, 728
HpyCH4III	ACNGT	5 cut(s)	204, 347, 633, 1054, 1061
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	5 cut(s)	35, 62, 412, 427, 601
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 196, 280, 409, 694, 886
HpyF3I	CTNAG	3 cut(s)	247, 339, 448
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	6 cut(s)	318, 488, 594, 692, 980, 1085
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	49, 390
LmnI	GCTCC	3 cut(s)	20, 29, 796
Lsp1109I	GCAGC	5 cut(s)	19, 424, 661, 709, 800
LweI	GCATC	2 cut(s)	49, 745
MaeI	CTAG	1 cut(s)	890
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	4 cut(s)	100, 239, 292, 310
MalI	GATC	2 cut(s)	51, 392
MboI	GATC	2 cut(s)	49, 390
MboII	GAAGA	5 cut(s)	128, 515, 583, 586, 1013
MhlI	GDGCHC	2 cut(s)	276, 603
MluCI	AATT	6 cut(s)	406, 529, 823, 963, 995, 1152
MlyI	GAGTC	2 cut(s)	102, 245
MmeI	TCCRAC	3 cut(s)	94, 416, 502
MseI	TTAA	3 cut(s)	368, 519, 822
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	6 cut(s)	105, 156, 187, 196, 608, 713
MspR9I	CCNGG	5 cut(s)	156, 187, 196, 609, 714
Mva1269I	GAATGC	1 cut(s)	388
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	6 cut(s)	29, 196, 280, 409, 694, 886
NciI	CCSGG	5 cut(s)	156, 187, 196, 609, 714
NdeI	CATATG	2 cut(s)	419, 617
NdeII	GATC	2 cut(s)	49, 390
NlaIII	CATG	6 cut(s)	318, 488, 594, 692, 980, 1085
NlaIV	GGNNCC	5 cut(s)	22, 194, 613, 798, 987
NmeAIII	GCCGAG	3 cut(s)	154, 537, 901
NmuCI	GTSAC	4 cut(s)	100, 239, 292, 310
PaqCI	CACCTGC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	133, 223, 868, 1046
PflFI	GACNNNGTC	1 cut(s)	592
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	6 cut(s)	34, 192, 414, 676, 699, 790
PleI	GAGTC	2 cut(s)	102, 245
PpsI	GAGTC	2 cut(s)	102, 245
Psp124BI	GAGCTC	1 cut(s)	276
PspEI	GGTNACC	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	5 cut(s)	22, 194, 613, 798, 987
PspPI	GGNCC	5 cut(s)	85, 161, 184, 192, 947
PsyI	GACNNNGTC	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	3 cut(s)	74, 93, 230
RsaNI	GTAC	3 cut(s)	73, 92, 229
RseI	CAYNNNNRTG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	368, 519, 822
SatI	GCNGC	6 cut(s)	33, 191, 413, 675, 698, 789
Sau3AI	GATC	2 cut(s)	49, 390
Sau96I	GGNCC	5 cut(s)	85, 161, 184, 192, 947
SchI	GAGTC	2 cut(s)	102, 245
ScrFI	CCNGG	5 cut(s)	156, 187, 196, 609, 714
SduI	GDGCHC	2 cut(s)	276, 603
SfaNI	GCATC	2 cut(s)	49, 745
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	6 cut(s)	406, 529, 823, 963, 995, 1152
SsiI	CCGC	4 cut(s)	159, 190, 621, 758
SspMI	CTAG	1 cut(s)	890
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	5 cut(s)	154, 185, 194, 607, 712
TaaI	ACNGT	5 cut(s)	204, 347, 633, 1054, 1061
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	2 cut(s)	885, 1106
TasI	AATT	6 cut(s)	406, 529, 823, 963, 995, 1152
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	4 cut(s)	133, 223, 868, 1046
Tru1I	TTAA	3 cut(s)	368, 519, 822
Tru9I	TTAA	3 cut(s)	368, 519, 822
TscAI	CASTG	5 cut(s)	147, 209, 242, 292, 957
TseFI	GTSAC	4 cut(s)	100, 239, 292, 310
TseI	GCWGC	5 cut(s)	32, 412, 674, 697, 788
Tsp45I	GTSAC	4 cut(s)	100, 239, 292, 310
TspDTI	ATGAA	8 cut(s)	501, 659, 705, 828, 950, 975, 1079, 1154
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	5 cut(s)	147, 209, 242, 292, 957
Tth111I	GACNNNGTC	1 cut(s)	592
Van91I	CCANNNNNTGG	1 cut(s)	82
VneI	GTGCAC	1 cut(s)	599
XapI	RAATTY	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.