Rroxscaffold_1G00035470

Vesicle-associated protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
51535712 .. 51544637
8926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035470.1

Sequence Viewer

Length: 270 bp
ATGTTGCTGACACAAGTGCAAGAAATATTGCTCGAATATAGTTTCTGTACAGTTTCCGTGCAAGCACAGAAAGAGGCTGCTTCAGACATGCAATGCAAGGACAAGTTTCTCCTTCAGCGTGTAAAAACCAATGATGGTGCAACTATAAAGAAAATTACTCTAGAAGTGGCTGCAAAAGGATTTTTGGAGCAGCTTGAAGCTCTGGAGAGATCTGCAGAGATATCTGGTACTTTGAACAATAGAAGAGAGGGTGTACTTTTTGAATTTTAA

Protein Analysis

89

Amino Acids

10.03

Weight (kDa)

5.12

Isoelectric Point (pI)

28.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 2 cut(s) 66, 98
AfaI GTAC 3 cut(s) 49, 229, 255
AgsI TTSAA 3 cut(s) 197, 235, 263
AluBI AGCT 2 cut(s) 193, 200
AluI AGCT 2 cut(s) 193, 200
ApeKI GCWGC 3 cut(s) 77, 170, 190
ApoI RAATTY 1 cut(s) 263
BbvI GCAGC 3 cut(s) 64, 157, 202
BccI CCATC 1 cut(s) 128
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 213
BglII AGATCT 1 cut(s) 209
BisI GCNGC 3 cut(s) 78, 171, 191
BlsI GCNGC 3 cut(s) 79, 172, 192
BpmI CTGGAG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 98
BseXI GCAGC 3 cut(s) 64, 157, 202
Bsp1407I TGTACA 1 cut(s) 47
Bsp143I GATC 1 cut(s) 209
BspMAI CTGCAG 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 47
BssMI GATC 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 238
BstAUI TGTACA 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 63
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 64, 157, 202
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 63
Csp6I GTAC 3 cut(s) 48, 228, 254
CviAII CATG 1 cut(s) 88
CviJI RGCY 4 cut(s) 77, 170, 193, 200
CviKI_1 RGCY 4 cut(s) 77, 170, 193, 200
CviQI GTAC 3 cut(s) 48, 228, 254
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco32I GATATC 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 66, 98
EcoRV GATATC 1 cut(s) 222
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 39, 89, 146
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 78, 171, 191
Fsp4HI GCNGC 3 cut(s) 78, 171, 191
FspBI CTAG 1 cut(s) 161
GluI GCNGC 3 cut(s) 78, 171, 191
GsuI CTGGAG 1 cut(s) 224
Hin1II CATG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 161, 203
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 7 cut(s) 19, 61, 91, 96, 140, 173, 215
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 2 cut(s) 188, 210
Lsp1109I GCAGC 3 cut(s) 64, 157, 202
MaeI CTAG 1 cut(s) 161
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 255
MflI RGATCY 1 cut(s) 209
MluCI AATT 2 cut(s) 153, 263
MnlI CCTC 2 cut(s) 67, 241
MseI TTAA 1 cut(s) 268
NdeII GATC 1 cut(s) 209
NlaIII CATG 1 cut(s) 91
NspI RCATGY 1 cut(s) 91
PkrI GCNGC 3 cut(s) 79, 172, 192
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 3 cut(s) 49, 229, 255
RsaNI GTAC 3 cut(s) 48, 228, 254
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 3 cut(s) 78, 171, 191
Sau3AI GATC 1 cut(s) 209
SetI ASST 2 cut(s) 195, 202
SfcI CTRYAG 1 cut(s) 213
Sse9I AATT 2 cut(s) 153, 263
SspI AATATT 1 cut(s) 27
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 153, 263
TatI WGTACW 2 cut(s) 47, 253
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TseI GCWGC 3 cut(s) 77, 170, 190
TspGWI ACGGA 1 cut(s) 46
XapI RAATTY 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.