Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Forward (+)

9312011 .. 9316301

Gene Structure 4291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1060200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGCACAGGCGAGCTCCTCAGCATCGAGCCTCTGGAGCTCAAGTTCCCCTTCGAGTTGAAGAAGCAGATCTCCTGTTCGCTCCAGCTCTCGAATAAGACCGATAGCTACGTCGCCTTCAAGGTCAAAACTACGAACCCGAAGAAGTATTGTGTTCGTCCGAACACCGGAGTTGTCTTGCCTCGATCCACATGTCATGTTATAGTTACAATGCAAGCCCAAAAAGAGGCTCCTCCGGACATGCAATGTAAGGACAAGTTCCTCCTCCAGAGTGTAAAAACTAACGATGGTGCAACGACAAAGGATGTTACTCCTGAAGTGTTCAATAAAGAGGCGGGACATGTGGTTGAGGAGTGCAAATTGAGAGTGGTATATGTTCCTCCACCTCAACCCCCTTCTCCGGTTCCAGAAGGTTCAGAAGAAGGGTCTTCACCAAGGGTTTCTGCTACAGAGAATAAAAATGTGAACAGTTCTGAGTTTTCCAATGCTGCAAAAGCATTTACTGAGCTTGAACCTCAGGAGAGATCTGCAGAGGCAAGATCACTTATTTTGAAATTGACAGAGGAAAAGAATAAAGCAAATCAACGAAGTAACAGGCTTCGTCAAGAGCTGGAACTCTTGAAGCGTCAAGGGAGCAAAAGTCGTGGTGGCGTTTCAATCCTTTTCCTCATTATTATTGGCTTAATTGGATTACTTTTGGGTTATCTCATGAAGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

241

Amino Acids

26.6

Weight (kDa)

9.21

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 111	3.1e-32	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	336
AfiI	CCNNNNNNNGG	3 cut(s)	167, 226, 400
AflIII	ACRYGT	2 cut(s)	191, 340
AgsI	TTSAA	7 cut(s)	61, 121, 325, 512, 553, 622, 657
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	6 cut(s)	16, 40, 88, 108, 508, 610
AluI	AGCT	6 cut(s)	16, 40, 88, 108, 508, 610
Alw21I	GWGCWC	3 cut(s)	8, 18, 42
AlwI	GGATC	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	423
AxyI	CCTNAGG	1 cut(s)	516
BanII	GRGCYC	2 cut(s)	18, 42
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	8, 18, 42
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	1 cut(s)	281
BfmI	CTRYAG	2 cut(s)	447, 528
BglII	AGATCT	2 cut(s)	69, 524
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	231, 405
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	3 cut(s)	56, 68, 251
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	3 cut(s)	167, 235, 400
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 625, 655
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 226, 400
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	251
BseAI	TCCGGA	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	167, 226, 400
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	4 cut(s)	34, 465, 495, 530
BseRI	GAGGAG	4 cut(s)	8, 222, 254, 365
BseXI	GCAGC	1 cut(s)	475
BsiHKAI	GWGCWC	3 cut(s)	8, 18, 42
BsiSI	CCGG	3 cut(s)	168, 236, 401
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	3 cut(s)	167, 226, 400
BsmFI	GGGAC	1 cut(s)	351
Bsp1286I	GDGCHC	3 cut(s)	8, 18, 42
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	4 cut(s)	69, 185, 524, 539
BspACI	CCGC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	33, 466, 496, 529
BspEI	TCCGGA	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	2 cut(s)	231, 405
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	4 cut(s)	69, 185, 524, 539
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	14, 216
BstDEI	CTNAG	4 cut(s)	20, 474, 504, 516
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	4 cut(s)	72, 188, 527, 542
BstMBI	GATC	4 cut(s)	69, 185, 524, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 494
BstNSI	RCATGY	3 cut(s)	195, 244, 344
BstSFI	CTRYAG	2 cut(s)	447, 528
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	69, 524
BstYI	RGATCY	2 cut(s)	69, 524
Bsu36I	CCTNAGG	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	14, 216
CciI	TCATGA	1 cut(s)	708
CseI	GACGC	1 cut(s)	614
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	5 cut(s)	192, 197, 241, 341, 709
DdeI	CTNAG	4 cut(s)	20, 474, 504, 516
DpnI	GATC	4 cut(s)	71, 187, 526, 541
DpnII	GATC	4 cut(s)	69, 185, 524, 539
Ecl136II	GAGCTC	2 cut(s)	16, 40
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	2 cut(s)	18, 42
Eco53kI	GAGCTC	2 cut(s)	16, 40
Eco57I	CTGAAG	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	516
EcoICRI	GAGCTC	2 cut(s)	16, 40
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	2 cut(s)	18, 42
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	5 cut(s)	195, 200, 244, 344, 712
FaiI	YATR	8 cut(s)	193, 198, 203, 242, 342, 373, 375, 710
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	5 cut(s)	191, 196, 240, 340, 708
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	2 cut(s)	18, 42
Fsp4HI	GCNGC	1 cut(s)	489
GluI	GCNGC	1 cut(s)	489
GsuI	CTGGAG	3 cut(s)	56, 68, 251
HapII	CCGG	3 cut(s)	168, 236, 401
HgaI	GACGC	1 cut(s)	614
Hin1II	CATG	5 cut(s)	195, 200, 244, 344, 712
HpaII	CCGG	3 cut(s)	168, 236, 401
HphI	GGTGA	1 cut(s)	423
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	3 cut(s)	162, 418, 475
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	5 cut(s)	61, 127, 404, 405, 416
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	6 cut(s)	214, 244, 293, 357, 491, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 494
HpyF3I	CTNAG	4 cut(s)	20, 474, 504, 516
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	5 cut(s)	195, 200, 244, 344, 712
Kpn2I	TCCGGA	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	69, 185, 524, 539
LmnI	GCTCC	5 cut(s)	21, 37, 87, 235, 633
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	205, 307, 590
MalI	GATC	4 cut(s)	71, 187, 526, 541
MboI	GATC	4 cut(s)	69, 185, 524, 539
MboII	GAAGA	4 cut(s)	73, 154, 420, 431
MflI	RGATCY	2 cut(s)	69, 524
MhlI	GDGCHC	3 cut(s)	8, 18, 42
MluCI	AATT	3 cut(s)	359, 554, 684
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	1 cut(s)	683
MspI	CCGG	3 cut(s)	168, 236, 401
MwoI	GCNNNNNNNGC	2 cut(s)	37, 494
NdeII	GATC	4 cut(s)	69, 185, 524, 539
NlaIII	CATG	5 cut(s)	195, 200, 244, 344, 712
NlaIV	GGNNCC	2 cut(s)	231, 405
NspI	RCATGY	3 cut(s)	195, 244, 344
PagI	TCATGA	1 cut(s)	708
PciI	ACATGT	2 cut(s)	191, 340
PkrI	GCNGC	1 cut(s)	490
PscI	ACATGT	2 cut(s)	191, 340
Psp124BI	GAGCTC	2 cut(s)	18, 42
PspN4I	GGNNCC	2 cut(s)	231, 405
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	2 cut(s)	69, 524
SacI	GAGCTC	2 cut(s)	18, 42
SaqAI	TTAA	1 cut(s)	683
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	4 cut(s)	69, 185, 524, 539
SduI	GDGCHC	3 cut(s)	8, 18, 42
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	2 cut(s)	447, 528
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	359, 554, 684
SsiI	CCGC	1 cut(s)	335
SstI	GAGCTC	2 cut(s)	18, 42
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	4 cut(s)	27, 54, 92, 184
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	359, 554, 684
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TseI	GCWGC	1 cut(s)	488
XceI	RCATGY	3 cut(s)	195, 244, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.