Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Forward (+)

11533928 .. 11535241

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG138100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTAATGATAATTGTTGTTACTGTCAGGTTGCTGACACAAGTGCAAGAAATATTGCTCGAATATAGTTTCTGTACAGTTACAGTGCAAGCACAGAAAGAGACTGCTCCAGACATGCAATGCAAGGACAAGTTTCTCCTTCAGAGTGTAAAAACCAATGATGGTGCAACTCCAAAGGAGATTACTCTAGAAGTGTTCAATGAAGAGGCAGGACATGTGGTTGAGGAGTGCAAATTCAGAGTGGTGTATGTTTCTCCACCTCAGCCCCCTTCTCCGGTCTCAGAAAGGTCGGAGGAAGGGTCTTCACCAAGAGCTTCAATAGTGGAGAATGAAAATCTTAATGCTGCTGAGATTTCCAATGCTGCAAAAGGACTTTCAGAGCAGCTTGAATCTCTGGAGAGATCCGCAGAGGTCAAATATCTGTTACTTTGTACGATAGAAGAGTGGGTGTACTTTTTGAATTTTAAAGAAACGGAAGCCCATAAGGATGACAGGAACCTAACACTCTCCCAAAGCTCATTAACCCACACTTGCATCAATAGATTCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

184

Amino Acids

20.77

Weight (kDa)

4.86

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	233, 460
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	3 cut(s)	76, 433, 452
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	5 cut(s)	199, 318, 389, 460, 547
AluBI	AGCT	3 cut(s)	314, 385, 516
AluI	AGCT	3 cut(s)	314, 385, 516
Alw26I	GTCTC	2 cut(s)	95, 283
AlwI	GGATC	1 cut(s)	396
ApeKI	GCWGC	3 cut(s)	344, 362, 382
ApoI	RAATTY	2 cut(s)	233, 460
AsuHPI	GGTGA	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	331, 349, 394
BccI	CCATC	1 cut(s)	155
BcoDI	GTCTC	2 cut(s)	95, 283
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	3 cut(s)	345, 363, 383
BlsI	GCNGC	3 cut(s)	346, 364, 384
BmiI	GGNNCC	1 cut(s)	497
BmsI	GCATC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	294
BpmI	CTGGAG	2 cut(s)	93, 416
Bpu10I	CCTNAGC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	3 cut(s)	275, 294, 339
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	331, 349, 394
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	95, 283
Bso31I	GGTCTC	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	401
BspACI	CCGC	1 cut(s)	405
BspCNI	CTCAG	3 cut(s)	274, 293, 340
BspLI	GGNNCC	1 cut(s)	497
BspPI	GGATC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	74
BssMI	GATC	1 cut(s)	401
Bst4CI	ACNGT	3 cut(s)	25, 79, 85
Bst6I	CTCTTC	2 cut(s)	198, 435
BstAUI	TGTACA	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	261, 280, 348
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	1 cut(s)	404
BstMAI	GTCTC	2 cut(s)	95, 283
BstMBI	GATC	1 cut(s)	401
BstNSI	RCATGY	2 cut(s)	118, 218
BstV1I	GCAGC	3 cut(s)	331, 349, 394
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	75, 432, 451
CviAII	CATG	2 cut(s)	115, 215
CviJI	RGCY	5 cut(s)	265, 314, 385, 479, 516
CviKI_1	RGCY	5 cut(s)	265, 314, 385, 479, 516
CviQI	GTAC	3 cut(s)	75, 432, 451
DdeI	CTNAG	3 cut(s)	261, 280, 348
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
DraI	TTTAAA	1 cut(s)	466
Eam1104I	CTCTTC	2 cut(s)	198, 435
EarI	CTCTTC	2 cut(s)	198, 435
Eco31I	GGTCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	125
FaeI	CATG	2 cut(s)	118, 218
FaiI	YATR	5 cut(s)	66, 116, 216, 249, 483
FatI	CATG	2 cut(s)	114, 214
Fnu4HI	GCNGC	3 cut(s)	345, 363, 383
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	3 cut(s)	345, 363, 383
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	3 cut(s)	345, 363, 383
GsuI	CTGGAG	2 cut(s)	93, 416
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	2 cut(s)	118, 218
HinfI	GANTC	2 cut(s)	389, 543
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	6 cut(s)	144, 239, 283, 292, 379, 554
Hpy188III	TCNNGA	3 cut(s)	110, 188, 395
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	149, 279, 290
HpyCH4III	ACNGT	3 cut(s)	25, 79, 85
HpyCH4V	TGCA	8 cut(s)	46, 88, 118, 123, 167, 231, 365, 534
HpyF3I	CTNAG	3 cut(s)	261, 280, 348
Hsp92II	CATG	2 cut(s)	118, 218
Kzo9I	GATC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	6 cut(s)	13, 123, 195, 288, 380, 478
Lsp1109I	GCAGC	3 cut(s)	331, 349, 394
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	3 cut(s)	19, 79, 423
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	3 cut(s)	215, 294, 452
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	3 cut(s)	12, 233, 460
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	199, 217, 270, 286, 403
MseI	TTAA	3 cut(s)	339, 465, 521
MslI	CAYNNNNRTG	1 cut(s)	486
MspI	CCGG	1 cut(s)	275
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	2 cut(s)	118, 218
NlaIV	GGNNCC	1 cut(s)	497
NspI	RCATGY	2 cut(s)	118, 218
PciI	ACATGT	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	389, 543
PkrI	GCNGC	3 cut(s)	346, 364, 384
PscI	ACATGT	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	3 cut(s)	76, 433, 452
RsaNI	GTAC	3 cut(s)	75, 432, 451
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	339, 465, 521
SatI	GCNGC	3 cut(s)	345, 363, 383
Sau3AI	GATC	1 cut(s)	401
SetI	ASST	8 cut(s)	32, 262, 290, 316, 387, 414, 501, 518
SfaNI	GCATC	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	3 cut(s)	12, 233, 460
SsiI	CCGC	1 cut(s)	405
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	25, 79, 85
TaqI	TCGA	1 cut(s)	60
TasI	AATT	3 cut(s)	12, 233, 460
TatI	WGTACW	2 cut(s)	74, 450
TfiI	GAWTC	2 cut(s)	389, 543
Tru1I	TTAA	3 cut(s)	339, 465, 521
Tru9I	TTAA	3 cut(s)	339, 465, 521
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	3 cut(s)	344, 362, 382
TspDTI	ATGAA	2 cut(s)	216, 345
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	90
XapI	RAATTY	2 cut(s)	233, 460
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	2 cut(s)	118, 218
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.