Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Reverse (-)

7938197 .. 7945770

Gene Structure 7574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1043700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGCACCGGCGAACTTCTCAGCATCGAGCCTCTGGAGCTCAAGTTCCCCTTCGAATTGAAGAAGCAGATCTCCTGTTCGCTCCAGCTCTCGAATAAGACCGATAGCTATGTCGCTTTCAAGGTCAAAACTACGAACCCCCAGAAGTATTGTGTTCGTCCGAACACCGGAATTGTCTTGCCTCGATCCACATGTGATGTTATAGTTACAATGCAAGCCCAAAAAGAGGCTCCTCCGGACATGCAATGTAAGGACAAGTTCCTCCTCCAGAGTATAAAAACTAACGATGGTGCAACTATGAAGGATATTACTCCTCAAGTGTTCAATAAAGAGGCGGGACATGAAGTTGAAGAGTGCAAATTAAGAGTGCTATATGTTTCTCCACCTCATCTGCCTTCTCAGGTTCCAGAAGGGTCAGAAGAAGGGTCTTCACCAAGGGTTTCTGCTACTGAGAATGGAAACGTGAATGGTTTTGAGTTTTCCAATGCTGCAAAAGCATTTACTGAGCTTGAACCTCAGGAGAGATCTGCAGAGGCAAGATCACTTATTTTGAAACTGACGGAGGAAAAGAATAAAGCAATTCAACATAGTAACAGGCTTCGTCAAGAGCTGGAGCTATTGAAGCGTCAAGGGAGCAAAAGTCGTGGTGGCGTTTCGATCCTTTTCGTCATTGTTATTGGCTTGATTGGATTACTTTTGGGTTATCTTATGAAGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

241

Amino Acids

26.65

Weight (kDa)

8.72

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 111	4.3e-32	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	2 cut(s)	180, 652
AfiI	CCNNNNNNNGG	2 cut(s)	167, 226
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	8 cut(s)	61, 121, 325, 350, 512, 553, 584, 622
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	6 cut(s)	40, 88, 108, 508, 610, 616
AluI	AGCT	6 cut(s)	40, 88, 108, 508, 610, 616
Alw21I	GWGCWC	2 cut(s)	8, 42
AlwI	GGATC	2 cut(s)	180, 652
Aor13HI	TCCGGA	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	54
AxyI	CCTNAGG	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	8, 42
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	528
BglII	AGATCT	2 cut(s)	69, 524
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	231, 405
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	4 cut(s)	56, 68, 251, 632
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	2 cut(s)	26, 300
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	2 cut(s)	167, 235
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 625, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 226
Bse118I	RCCGGY	1 cut(s)	8
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	251
BseAI	TCCGGA	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	434
BseLI	CCNNNNNNNGG	2 cut(s)	167, 226
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	5 cut(s)	34, 413, 441, 495, 530
BseRI	GAGGAG	3 cut(s)	222, 254, 303
BseXI	GCAGC	1 cut(s)	475
BsiHKAI	GWGCWC	2 cut(s)	8, 42
BsiSI	CCGG	3 cut(s)	9, 168, 236
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	167, 226
BsmFI	GGGAC	1 cut(s)	351
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	8, 42
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	5 cut(s)	69, 185, 524, 539, 657
BspACI	CCGC	1 cut(s)	335
BspCNI	CTCAG	5 cut(s)	33, 412, 442, 496, 529
BspEI	TCCGGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	231, 405
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	2 cut(s)	180, 652
BspT104I	TTCGAA	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	5 cut(s)	69, 185, 524, 539, 657
BssT1I	CCWWGG	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	5 cut(s)	20, 399, 450, 504, 516
BstKTI	GATC	5 cut(s)	72, 188, 527, 542, 660
BstMBI	GATC	5 cut(s)	69, 185, 524, 539, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 494, 622
BstNSI	RCATGY	2 cut(s)	195, 244
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	69, 524
BstYI	RGATCY	2 cut(s)	69, 524
Bsu36I	CCTNAGG	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	8
CseI	GACGC	1 cut(s)	614
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	3 cut(s)	192, 241, 341
DdeI	CTNAG	5 cut(s)	20, 399, 450, 504, 516
DpnI	GATC	5 cut(s)	71, 187, 526, 541, 659
DpnII	GATC	5 cut(s)	69, 185, 524, 539, 657
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	3 cut(s)	195, 244, 344
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	3 cut(s)	191, 240, 340
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	489
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	489
GluI	GCNGC	1 cut(s)	489
GsuI	CTGGAG	4 cut(s)	56, 68, 251, 632
HapII	CCGG	3 cut(s)	9, 168, 236
HgaI	GACGC	1 cut(s)	614
Hin1II	CATG	3 cut(s)	195, 244, 344
HpaII	CCGG	3 cut(s)	9, 168, 236
HphI	GGTGA	1 cut(s)	423
Hpy188I	TCNGA	2 cut(s)	162, 418
Hpy188III	TCNNGA	7 cut(s)	35, 91, 236, 268, 407, 518, 605
HpyAV	CCTTC	5 cut(s)	61, 295, 404, 405, 416
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	6 cut(s)	214, 244, 293, 357, 491, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 494, 622
HpyF3I	CTNAG	5 cut(s)	20, 399, 450, 504, 516
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	195, 244, 344
Kpn2I	TCCGGA	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	69, 185, 524, 539, 657
LmnI	GCTCC	5 cut(s)	37, 87, 235, 613, 633
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	205, 590
MalI	GATC	5 cut(s)	71, 187, 526, 541, 659
MboI	GATC	5 cut(s)	69, 185, 524, 539, 657
MboII	GAAGA	4 cut(s)	73, 362, 420, 431
MflI	RGATCY	2 cut(s)	69, 524
MhlI	GDGCHC	2 cut(s)	8, 42
MluCI	AATT	4 cut(s)	56, 171, 359, 579
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	1 cut(s)	362
MspI	CCGG	3 cut(s)	9, 168, 236
MwoI	GCNNNNNNNGC	3 cut(s)	37, 494, 622
NdeII	GATC	5 cut(s)	69, 185, 524, 539, 657
NlaIII	CATG	3 cut(s)	195, 244, 344
NlaIV	GGNNCC	2 cut(s)	231, 405
NspI	RCATGY	2 cut(s)	195, 244
NspV	TTCGAA	1 cut(s)	54
PciI	ACATGT	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	490
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	231, 405
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	2 cut(s)	69, 524
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	5 cut(s)	69, 185, 524, 539, 657
SduI	GDGCHC	2 cut(s)	8, 42
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	54
SgrAI	CRCCGGYG	1 cut(s)	8
SmlI	CTYRAG	2 cut(s)	41, 315
SmoI	CTYRAG	2 cut(s)	41, 315
Sse9I	AATT	4 cut(s)	56, 171, 359, 579
SsiI	CCGC	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	434
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	5 cut(s)	27, 54, 92, 184, 656
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	4 cut(s)	56, 171, 359, 579
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TseI	GCWGC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	314, 357
TspGWI	ACGGA	1 cut(s)	575
XceI	RCATGY	2 cut(s)	195, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.