Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Reverse (-)

10771153 .. 10775134

Gene Structure 3982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGCACCGGCGAGCTCCTCAGCATCGAGCCTCTCGAGCTCAAGTTCCCCTTCGAATTGAAGAAGCAGATCTCTTGCTCGCTTCAGCTCTCCAATAAGACCGATAGCTATGTCGCTTTCAAGGTCAAAACCACAAATCCTAAGAAATATTGTGTTCGTCCAAACACGGGAATTGTGTTGCCACGATCAACATGTGATGTTATAGTTACAATGCAGGCGCAAAAGGAGGCTCCTCCAGACATGCAATGCAAGGACAAGTTTCTCCTTCAGAGTGTAAAGACCAATGATGGTGCAACTCCAAAGGATATTACTCCAGAAGCGTTCAATAAAGAAGCAGGACATGTGGTTGAGGAGTGCAAATTGAGAGTGGTATATGTTGCTCCACCTCAGCCCCCTTCTCCAGTTCCAGAAGGGTCAGAGGAAGGGTCTTCACCAAGAGCTACTGTTACAGAGAACGGAAATCTTGGTGCTGAATTTTCTAATGCCACAAAAGGATTATCGGAGCAGCTTGAGACCCCGGAGAGATCTGTAGAGGCAAGAGCACTTATTGCGAAATTGGCAGAGGAAAAGTTAAATGCGCTTCAAACAAATAATAGGCTTCGTCAGGAGCTGGAACTCTTGAGGAATCAAGGGGGCAAAAGCAGTGGTGGCGTTTCAATCATTGTTGTCATTGTCATTGGCCTGCTTGGCTTACTTTTGGGTTATCTCATGAAGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

241

Amino Acids

26.12

Weight (kDa)

8.2

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	2.1e-32	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	68, 251
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	2 cut(s)	191, 340
AgsI	TTSAA	5 cut(s)	61, 121, 325, 584, 657
AluBI	AGCT	7 cut(s)	16, 40, 88, 108, 440, 508, 610
AluI	AGCT	7 cut(s)	16, 40, 88, 108, 440, 508, 610
Alw21I	GWGCWC	4 cut(s)	8, 18, 42, 544
Alw26I	GTCTC	1 cut(s)	506
AlwNI	CAGNNNCTG	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	679
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	1 cut(s)	473
AspLEI	GCGC	2 cut(s)	220, 580
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	35
BanII	GRGCYC	2 cut(s)	18, 42
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	4 cut(s)	8, 18, 42, 544
BbvCI	CCTCAGC	2 cut(s)	20, 387
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	687
BglII	AGATCT	2 cut(s)	69, 524
BisI	GCNGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	507
Bme1390I	CCNGG	1 cut(s)	518
BmeT110I	CYCGRG	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	3 cut(s)	219, 297, 384
Bpu10I	CCTNAGC	2 cut(s)	20, 387
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	3 cut(s)	26, 530, 640
BpuMI	CCSGG	1 cut(s)	518
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	34, 401
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	3 cut(s)	8, 222, 365
BseXI	GCAGC	1 cut(s)	517
BshFI	GGCC	1 cut(s)	681
BsiHKAI	GWGCWC	4 cut(s)	8, 18, 42, 544
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	9, 518
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	681
Bso31I	GGTCTC	1 cut(s)	506
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	4 cut(s)	8, 18, 42, 544
Bsp143I	GATC	3 cut(s)	69, 185, 524
BspANI	GGCC	1 cut(s)	681
BspCNI	CTCAG	2 cut(s)	33, 400
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	3 cut(s)	69, 185, 524
Bst4CI	ACNGT	1 cut(s)	445
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	4 cut(s)	14, 80, 216, 683
BstDEI	CTNAG	3 cut(s)	20, 141, 387
BstHHI	GCGC	2 cut(s)	220, 580
BstKTI	GATC	3 cut(s)	72, 188, 527
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	3 cut(s)	69, 185, 524
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 548, 557, 648, 687
BstNSI	RCATGY	3 cut(s)	195, 244, 344
BstSCI	CCNGG	1 cut(s)	516
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	69, 524
BstYI	RGATCY	2 cut(s)	69, 524
BsuRI	GGCC	1 cut(s)	681
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	4 cut(s)	14, 80, 216, 683
CaiI	CAGNNNCTG	1 cut(s)	610
CciI	TCATGA	1 cut(s)	708
CfoI	GCGC	2 cut(s)	220, 580
Cfr10I	RCCGGY	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	4 cut(s)	192, 241, 341, 709
DdeI	CTNAG	3 cut(s)	20, 141, 387
DpnI	GATC	3 cut(s)	71, 187, 526
DpnII	GATC	3 cut(s)	69, 185, 524
Ecl136II	GAGCTC	2 cut(s)	16, 40
Eco24I	GRGCYC	2 cut(s)	18, 42
Eco31I	GGTCTC	1 cut(s)	506
Eco53kI	GAGCTC	2 cut(s)	16, 40
Eco57I	CTGAAG	2 cut(s)	68, 251
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	2 cut(s)	16, 40
EcoT38I	GRGCYC	2 cut(s)	18, 42
FaeI	CATG	4 cut(s)	195, 244, 344, 712
FaiI	YATR	8 cut(s)	111, 193, 203, 242, 342, 373, 375, 710
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	4 cut(s)	191, 240, 340, 708
Fnu4HI	GCNGC	1 cut(s)	506
FriOI	GRGCYC	2 cut(s)	18, 42
Fsp4HI	GCNGC	1 cut(s)	506
GlaI	GCGC	2 cut(s)	219, 579
GluI	GCNGC	1 cut(s)	506
GsuI	CTGGAG	3 cut(s)	219, 297, 384
HaeIII	GGCC	1 cut(s)	681
HapII	CCGG	2 cut(s)	9, 518
HhaI	GCGC	2 cut(s)	220, 580
Hin1II	CATG	4 cut(s)	195, 244, 344, 712
Hin6I	GCGC	2 cut(s)	218, 578
HinP1I	GCGC	2 cut(s)	218, 578
HinfI	GANTC	1 cut(s)	625
HpaII	CCGG	2 cut(s)	9, 518
HphI	GGTGA	1 cut(s)	423
Hpy188I	TCNGA	3 cut(s)	270, 418, 502
Hpy188III	TCNNGA	7 cut(s)	35, 236, 314, 407, 605, 619, 709
HpyAV	CCTTC	5 cut(s)	61, 275, 404, 405, 416
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	5 cut(s)	214, 244, 249, 293, 357
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 548, 557, 648, 687
HpyF3I	CTNAG	3 cut(s)	20, 141, 387
Hsp92II	CATG	4 cut(s)	195, 244, 344, 712
HspAI	GCGC	2 cut(s)	218, 578
Kzo9I	GATC	3 cut(s)	69, 185, 524
LmnI	GCTCC	5 cut(s)	21, 235, 385, 502, 607
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	205, 445
MalI	GATC	3 cut(s)	71, 187, 526
MboI	GATC	3 cut(s)	69, 185, 524
MboII	GAAGA	2 cut(s)	73, 420
MflI	RGATCY	2 cut(s)	69, 524
MhlI	GDGCHC	4 cut(s)	8, 18, 42, 544
MluCI	AATT	5 cut(s)	56, 171, 359, 473, 554
MseI	TTAA	1 cut(s)	572
MspI	CCGG	2 cut(s)	9, 518
MspR9I	CCNGG	1 cut(s)	518
MwoI	GCNNNNNNNGC	5 cut(s)	37, 548, 557, 648, 687
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	3 cut(s)	69, 185, 524
NlaIII	CATG	4 cut(s)	195, 244, 344, 712
NlaIV	GGNNCC	1 cut(s)	231
NspI	RCATGY	3 cut(s)	195, 244, 344
NspV	TTCGAA	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	35
PagI	TCATGA	1 cut(s)	708
PciI	ACATGT	2 cut(s)	191, 340
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	507
PscI	ACATGT	2 cut(s)	191, 340
Psp124BI	GAGCTC	2 cut(s)	18, 42
PspN4I	GGNNCC	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	610
PsuI	RGATCY	2 cut(s)	69, 524
SacI	GAGCTC	2 cut(s)	18, 42
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	1 cut(s)	506
Sau3AI	GATC	3 cut(s)	69, 185, 524
ScrFI	CCNGG	1 cut(s)	518
SduI	GDGCHC	4 cut(s)	8, 18, 42, 544
SetI	ASST	9 cut(s)	18, 42, 90, 110, 126, 388, 442, 510, 612
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	528
Sfr274I	CTCGAG	1 cut(s)	35
SfuI	TTCGAA	1 cut(s)	54
SgrAI	CRCCGGYG	1 cut(s)	8
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	4 cut(s)	35, 41, 509, 619
SmoI	CTYRAG	4 cut(s)	35, 41, 509, 619
Sse9I	AATT	5 cut(s)	56, 171, 359, 473, 554
SspI	AATATT	1 cut(s)	149
SstI	GAGCTC	2 cut(s)	18, 42
StyD4I	CCNGG	1 cut(s)	516
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	3 cut(s)	27, 36, 54
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	5 cut(s)	56, 171, 359, 473, 554
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TscAI	CASTG	1 cut(s)	649
TseI	GCWGC	1 cut(s)	505
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	649
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	3 cut(s)	195, 244, 344
XhoI	CTCGAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.