RLG00000001232

Vesicle-associated protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
12453109 .. 12457518
4410 bp
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UTR
Exon/CDS
Intron
RLM00000001232

Sequence Viewer

Length: 306 bp
ATGCAATGCAAGGACAAGCTTCTCCTTCAGAGTGTAAAAACCAATGATGGTGCAACTCCAAAGGAGATTACTCTAGAAGTGTTCAATGAAGAGGCAGGACATGTGGTTGAGGAATGCAAATTCAGAGTGGTATATGTTTCTCCACCTCAGCCCCCTTCTTCAGTCCTAGAAAGGTCGGAGGAAGGGTCTTTACCAAGAGCTTCAATAGTGGAGAATGAAAATCTTAATGGTGCTGAGTTTTCCAATCATGACTATAATGATTGGGTGCCCATGATTCCTTTAACCTTCCTTGCTGGGACAAGGTAA

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

4.7

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 11, 144
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 2 cut(s) 85, 204
AluBI AGCT 2 cut(s) 19, 200
AluI AGCT 2 cut(s) 19, 200
ApoI RAATTY 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 270
BanI GGYRCC 1 cut(s) 265
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
BbvCI CCTCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 41
BfaI CTAG 2 cut(s) 74, 167
BmiI GGNNCC 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse3DI GCAATG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 161, 225
BseSI GKGCMC 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 270
BspCNI CTCAG 2 cut(s) 160, 226
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 147, 234
BstNSI RCATGY 1 cut(s) 104
BstSLI GKGCMC 1 cut(s) 270
CciI TCATGA 1 cut(s) 247
CviAII CATG 3 cut(s) 101, 248, 271
CviJI RGCY 3 cut(s) 19, 151, 200
CviKI_1 RGCY 3 cut(s) 19, 151, 200
DdeI CTNAG 2 cut(s) 147, 234
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 11, 144
FaeI CATG 3 cut(s) 104, 251, 274
FaiI YATR 6 cut(s) 102, 133, 135, 249, 255, 272
FatI CATG 3 cut(s) 100, 247, 270
FspBI CTAG 2 cut(s) 74, 167
GsaI CCCAGC 1 cut(s) 297
Hin1II CATG 3 cut(s) 104, 251, 274
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 274
Hpy188I TCNGA 3 cut(s) 30, 125, 178
Hpy188III TCNNGA 2 cut(s) 74, 248
HpyAV CCTTC 4 cut(s) 35, 165, 176, 295
HpyCH4V TGCA 4 cut(s) 4, 9, 53, 117
HpyF3I CTNAG 2 cut(s) 147, 234
Hsp92II CATG 3 cut(s) 104, 251, 274
LpnPI CCDG 2 cut(s) 81, 279
MaeI CTAG 2 cut(s) 74, 167
MboII GAAGA 2 cut(s) 101, 150
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 4 cut(s) 85, 103, 156, 172
MseI TTAA 2 cut(s) 225, 281
Mva1269I GAATGC 1 cut(s) 119
NlaIII CATG 3 cut(s) 104, 251, 274
NlaIV GGNNCC 1 cut(s) 267
NspI RCATGY 1 cut(s) 104
PagI TCATGA 1 cut(s) 247
PciI ACATGT 1 cut(s) 100
PctI GAATGC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 225, 281
SduI GDGCHC 1 cut(s) 270
SetI ASST 6 cut(s) 21, 148, 176, 202, 287, 305
Sse9I AATT 1 cut(s) 119
SspMI CTAG 2 cut(s) 74, 167
TasI AATT 1 cut(s) 119
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 2 cut(s) 225, 281
Tru9I TTAA 2 cut(s) 225, 281
TspDTI ATGAA 2 cut(s) 102, 231
XapI RAATTY 1 cut(s) 119
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 1 cut(s) 104
XspI CTAG 2 cut(s) 74, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.