Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Forward (+)

48232947 .. 48237240

Gene Structure 4294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00254080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGCACCGGCGAGCTTCTCAGCATCGAGCCTCTCGAGCTCAAGTTCCCCTTCGAATTGAAGAAGCAGATCTCTTGCTCGCTTCAGCTGTCGAATAAGACCGATAGCTATGTCGCTTTCAAGGTCAAAACTACGAATCCGAAGAAGTATTGTGTTCGTCCGAACACGGGAATTGTCTTGCCGCGATCTACATGTGATGTTATAGTTACAATGCAGGCGCAAAAAGAGGCTCCTCCAGACATGCAATGCAAGGATAAGTTTCTCCTGCAGAGTGTAAAAACCAATGACGGTGCAACTCCGAAGGATATTACTCCAGAAGTGTTCAATAAAGACGCAGGACATGTGGTTGAGGAGTGCAAATTGAGAGTGGTATATGTTTCTCCACCTCAGCCCCCTTCTCCAGTCCCAGAAGGGTCAGAGGAAGGGTCTTCACCAAGAGCTTCTGTTACAGAGAATGGAAATCTTAATGGTTCCGAGTTTTCCAATGCTGCAAAAGGACTTTCAGAGCAGATTGAAGTTCCGAAGAGATCTGCAGAGGAAAATGCACTTATTAAGAAATTGTCAGAGGAAAAGTCAAATGCGCTTCAAACAAATAAGAGGCTTCGTCAGGAGCTGGAACTCTTAAGGAATCAAGGGGGCAAAAGCCATGGTGGTGTTTCAATCATTGTCGTCATTATTATTGGCCTCATTGGCTTACTTTTGGGTTATCTCATGAAGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

241

Amino Acids

26.35

Weight (kDa)

8.7

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	3.5e-32	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AciI	CCGC	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	622
AflIII	ACRYGT	2 cut(s)	191, 340
AgsI	TTSAA	6 cut(s)	61, 121, 325, 515, 587, 660
AluBI	AGCT	6 cut(s)	16, 40, 88, 108, 440, 613
AluI	AGCT	6 cut(s)	16, 40, 88, 108, 440, 613
Alw21I	GWGCWC	2 cut(s)	8, 42
AlwNI	CAGNNNCTG	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	1 cut(s)	488
AspLEI	GCGC	2 cut(s)	220, 583
AsuHPI	GGTGA	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	8, 42
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	475
BfmI	CTRYAG	2 cut(s)	266, 531
BfrI	CTTAAG	1 cut(s)	622
BglI	GCCNNNNNGGC	1 cut(s)	690
BglII	AGATCT	2 cut(s)	69, 527
BisI	GCNGC	2 cut(s)	182, 489
BlsI	GCNGC	2 cut(s)	183, 490
BmeT110I	CYCGRG	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	231, 472
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	3 cut(s)	219, 297, 384
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	646
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	34, 401
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	2 cut(s)	222, 365
BseXI	GCAGC	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	684
BsiHKAI	GWGCWC	2 cut(s)	8, 42
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	684
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	8, 42
Bsp143I	GATC	3 cut(s)	69, 185, 527
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	2 cut(s)	33, 400
BspFNI	CGCG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	2 cut(s)	231, 472
BspMAI	CTGCAG	2 cut(s)	270, 535
BspT104I	TTCGAA	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	3 cut(s)	69, 185, 527
BssT1I	CCWWGG	1 cut(s)	646
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	518
BstAFI	CTTAAG	1 cut(s)	622
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	14, 80, 216
BstDEI	CTNAG	2 cut(s)	20, 387
BstDSI	CCRYGG	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	220, 583
BstKTI	GATC	3 cut(s)	72, 188, 530
BstMBI	GATC	3 cut(s)	69, 185, 527
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 690
BstNSI	RCATGY	3 cut(s)	195, 244, 344
BstSFI	CTRYAG	2 cut(s)	266, 531
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	69, 527
BstYI	RGATCY	2 cut(s)	69, 527
BsuRI	GGCC	1 cut(s)	684
BtgI	CCRYGG	1 cut(s)	646
Cac8I	GCNNGC	3 cut(s)	14, 80, 216
CaiI	CAGNNNCTG	1 cut(s)	613
CciI	TCATGA	1 cut(s)	711
CfoI	GCGC	2 cut(s)	220, 583
Cfr10I	RCCGGY	1 cut(s)	8
CseI	GACGC	1 cut(s)	341
CviAII	CATG	5 cut(s)	192, 241, 341, 647, 712
DdeI	CTNAG	2 cut(s)	20, 387
DpnI	GATC	3 cut(s)	71, 187, 529
DpnII	GATC	3 cut(s)	69, 185, 527
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	5 cut(s)	195, 244, 344, 650, 715
FaiI	YATR	9 cut(s)	111, 193, 203, 242, 342, 373, 375, 648, 713
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	5 cut(s)	191, 240, 340, 646, 711
Fnu4HI	GCNGC	2 cut(s)	182, 489
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	182, 489
GlaI	GCGC	2 cut(s)	219, 582
GluI	GCNGC	2 cut(s)	182, 489
GsuI	CTGGAG	3 cut(s)	219, 297, 384
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	2 cut(s)	220, 583
Hin1II	CATG	5 cut(s)	195, 244, 344, 650, 715
Hin6I	GCGC	2 cut(s)	218, 581
HinP1I	GCGC	2 cut(s)	218, 581
HinfI	GANTC	2 cut(s)	136, 628
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	423
Hpy188I	TCNGA	8 cut(s)	141, 162, 300, 418, 475, 505, 522, 565
Hpy188III	TCNNGA	5 cut(s)	35, 236, 314, 608, 712
HpyAV	CCTTC	5 cut(s)	61, 295, 404, 405, 416
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	9 cut(s)	214, 244, 249, 268, 293, 357, 491, 533, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 690
HpyF3I	CTNAG	2 cut(s)	20, 387
Hsp92II	CATG	5 cut(s)	195, 244, 344, 650, 715
HspAI	GCGC	2 cut(s)	218, 581
Kzo9I	GATC	3 cut(s)	69, 185, 527
LmnI	GCTCC	2 cut(s)	235, 610
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	205, 445
MalI	GATC	3 cut(s)	71, 187, 529
MboI	GATC	3 cut(s)	69, 185, 527
MboII	GAAGA	4 cut(s)	73, 154, 420, 535
MflI	RGATCY	2 cut(s)	69, 527
MhlI	GDGCHC	2 cut(s)	8, 42
MluCI	AATT	4 cut(s)	56, 171, 359, 557
MseI	TTAA	3 cut(s)	465, 552, 623
MslI	CAYNNNNRTG	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	88
MspCI	CTTAAG	1 cut(s)	622
MspI	CCGG	1 cut(s)	9
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	37, 690
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	3 cut(s)	69, 185, 527
NlaIII	CATG	5 cut(s)	195, 244, 344, 650, 715
NlaIV	GGNNCC	2 cut(s)	231, 472
NspI	RCATGY	3 cut(s)	195, 244, 344
NspV	TTCGAA	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	35
PagI	TCATGA	1 cut(s)	711
PciI	ACATGT	2 cut(s)	191, 340
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	136, 628
PkrI	GCNGC	2 cut(s)	183, 490
PscI	ACATGT	2 cut(s)	191, 340
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	231, 472
PstI	CTGCAG	2 cut(s)	270, 535
PstNI	CAGNNNCTG	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	69, 527
PvuII	CAGCTG	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	651
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	465, 552, 623
SatI	GCNGC	2 cut(s)	182, 489
Sau3AI	GATC	3 cut(s)	69, 185, 527
SduI	GDGCHC	2 cut(s)	8, 42
SetI	ASST	8 cut(s)	18, 42, 90, 110, 126, 388, 442, 615
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	2 cut(s)	266, 531
Sfr274I	CTCGAG	1 cut(s)	35
SfuI	TTCGAA	1 cut(s)	54
SgrAI	CRCCGGYG	1 cut(s)	8
SlaI	CTCGAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	3 cut(s)	35, 41, 622
SmoI	CTYRAG	3 cut(s)	35, 41, 622
Sse9I	AATT	4 cut(s)	56, 171, 359, 557
SsiI	CCGC	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	27, 36, 54, 92
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	4 cut(s)	56, 171, 359, 557
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	136, 628
Tru1I	TTAA	3 cut(s)	465, 552, 623
Tru9I	TTAA	3 cut(s)	465, 552, 623
TseI	GCWGC	1 cut(s)	488
Vha464I	CTTAAG	1 cut(s)	622
XceI	RCATGY	3 cut(s)	195, 244, 344
XhoI	CTCGAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.