Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Forward (+)

8617392 .. 8621209

Gene Structure 3818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G071100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGCACGGGCGAGCTTCTCAGCATCGAGCCTCTGGAGCTCAAGTTCCCCTTCGAATTGAAGAAGCAGATCTCTTGTTCGCTTCTGCTCTCGAATAAGACCGATAACTATGTCGCTTTCAAGGTCAAAACTACGAATCCCAAGAAGTATTGTGTTCGTCCGAACACGGGAATTGTCTCGCCTCGATCCACATGTGATGTTATAGTTACAATGCAAGCACAAAAAGAGGCTCCTCCAGACATGCAATGCAAGGACAAGTTTCTCCTCCAGAGTGTAAAAACCAATGATGGTGCAGCTCCAAAGGATATTACTCCAGAAGTGTTCAATAAAGAGGCGGGAAATGTGGTTGAGGAGTGCAAATTGAGAGTGGTATATGTTTCTCCACCTCAACCACCTTCTCCGGTTCCAGAAGGGTCAGAAGAAGGGTCTTCACCAAGGGGTTCTGTTATGGAGAATGGAAATGTGAATGGTGCTGAGTTTTCCAATGCTGCAAAAGCATTTAGTGAGCAGCTTGAACCTCAGGAGAGATCTGCAGAGGCAAGATCACTTATATTGAAACTGACAGAGGAAAAGAATAAAGCAAATCAACAAAGTAACAGGCTTCGCCAGGAGCTGGAACTCTTGAAGCGTCAAGGGAGCAAAAGTCGTGGTGGTGTTTCGATCCTTTTCGTCATTATTGTTGGCTTGATTGGCTTACTTTTGGGCTATCTCATGAAGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

242

Amino Acids

26.48

Weight (kDa)

8.87

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	613
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	2 cut(s)	180, 655
AfiI	CCNNNNNNNGG	2 cut(s)	167, 613
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	6 cut(s)	61, 121, 325, 515, 556, 625
AjnI	CCWGG	1 cut(s)	606
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	5 cut(s)	16, 40, 296, 511, 613
AluI	AGCT	5 cut(s)	16, 40, 296, 511, 613
Alw21I	GWGCWC	2 cut(s)	8, 42
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	180, 655
AlwNI	CAGNNNCTG	1 cut(s)	613
ApeKI	GCWGC	3 cut(s)	293, 488, 508
AsuHPI	GGTGA	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	54
AxyI	CCTNAGG	1 cut(s)	519
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	8, 42
BbvI	GCAGC	3 cut(s)	305, 475, 520
BccI	CCATC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	181
BfmI	CTRYAG	1 cut(s)	531
BglII	AGATCT	2 cut(s)	69, 527
BisI	GCNGC	3 cut(s)	294, 489, 509
BlsI	GCNGC	3 cut(s)	295, 490, 510
Bme1390I	CCNGG	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	231, 405
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	4 cut(s)	56, 219, 251, 297
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 628, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 613
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	434
BseLI	CCNNNNNNNGG	2 cut(s)	167, 613
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	3 cut(s)	34, 465, 533
BseRI	GAGGAG	3 cut(s)	222, 254, 365
BseXI	GCAGC	3 cut(s)	305, 475, 520
BsgI	GTGCAG	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	8, 42
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	167, 613
BsmAI	GTCTC	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	8, 42
Bsp143I	GATC	5 cut(s)	69, 185, 527, 542, 660
BspACI	CCGC	1 cut(s)	335
BspCNI	CTCAG	3 cut(s)	33, 466, 532
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	2 cut(s)	231, 405
BspMAI	CTGCAG	1 cut(s)	535
BspPI	GGATC	2 cut(s)	180, 655
BspT104I	TTCGAA	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	5 cut(s)	69, 185, 527, 542, 660
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	608
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	14, 216
BstDEI	CTNAG	3 cut(s)	20, 474, 519
BstKTI	GATC	5 cut(s)	72, 188, 530, 545, 663
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	5 cut(s)	69, 185, 527, 542, 660
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 494, 690
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	2 cut(s)	195, 244
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	305, 475, 520
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	69, 527
BstYI	RGATCY	2 cut(s)	69, 527
Bsu36I	CCTNAGG	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	14, 216
CaiI	CAGNNNCTG	1 cut(s)	613
CciI	TCATGA	1 cut(s)	711
CseI	GACGC	1 cut(s)	617
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	3 cut(s)	192, 241, 712
DdeI	CTNAG	3 cut(s)	20, 474, 519
DpnI	GATC	5 cut(s)	71, 187, 529, 544, 662
DpnII	GATC	5 cut(s)	69, 185, 527, 542, 660
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	3 cut(s)	195, 244, 715
FaiI	YATR	9 cut(s)	111, 193, 203, 242, 373, 375, 449, 551, 713
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	3 cut(s)	191, 240, 711
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	294, 489, 509
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	3 cut(s)	294, 489, 509
GluI	GCNGC	3 cut(s)	294, 489, 509
GsuI	CTGGAG	4 cut(s)	56, 219, 251, 297
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	3 cut(s)	195, 244, 715
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	1 cut(s)	423
Hpy188I	TCNGA	2 cut(s)	162, 418
Hpy188III	TCNNGA	9 cut(s)	35, 91, 236, 268, 314, 407, 521, 622, 712
HpyAV	CCTTC	4 cut(s)	61, 404, 405, 416
HpyCH4V	TGCA	7 cut(s)	214, 244, 249, 293, 357, 491, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 494, 690
HpyF3I	CTNAG	3 cut(s)	20, 474, 519
Hsp92II	CATG	3 cut(s)	195, 244, 715
Kzo9I	GATC	5 cut(s)	69, 185, 527, 542, 660
LmnI	GCTCC	5 cut(s)	37, 235, 301, 610, 636
Lsp1109I	GCAGC	3 cut(s)	305, 475, 520
LweI	GCATC	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	205, 593
MalI	GATC	5 cut(s)	71, 187, 529, 544, 662
MboI	GATC	5 cut(s)	69, 185, 527, 542, 660
MboII	GAAGA	3 cut(s)	73, 420, 431
MflI	RGATCY	2 cut(s)	69, 527
MhlI	GDGCHC	2 cut(s)	8, 42
MluCI	AATT	3 cut(s)	56, 171, 359
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	37, 494, 690
NdeII	GATC	5 cut(s)	69, 185, 527, 542, 660
NlaIII	CATG	3 cut(s)	195, 244, 715
NlaIV	GGNNCC	2 cut(s)	231, 405
NspI	RCATGY	2 cut(s)	195, 244
NspV	TTCGAA	1 cut(s)	54
PagI	TCATGA	1 cut(s)	711
PciI	ACATGT	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	3 cut(s)	295, 490, 510
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	231, 405
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	69, 527
SacI	GAGCTC	1 cut(s)	42
SatI	GCNGC	3 cut(s)	294, 489, 509
Sau3AI	GATC	5 cut(s)	69, 185, 527, 542, 660
ScrFI	CCNGG	1 cut(s)	608
SduI	GDGCHC	2 cut(s)	8, 42
SetI	ASST	9 cut(s)	18, 42, 126, 298, 388, 397, 513, 520, 615
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	56, 171, 359
SsiI	CCGC	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	606
StyI	CCWWGG	1 cut(s)	434
TaqI	TCGA	5 cut(s)	27, 54, 92, 184, 659
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	56, 171, 359
TfiI	GAWTC	1 cut(s)	136
TseI	GCWGC	3 cut(s)	293, 488, 508
Van91I	CCANNNNNTGG	1 cut(s)	613
XceI	RCATGY	2 cut(s)	195, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.