Rorug01G0202500

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001420
Physical Location & Seq
Reverse (-)
28189227 .. 28189794
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0202500.1

Sequence Viewer

Length: 471 bp
ATGGTTCACTCATACCTCAATGTGGCCACCGACTTTGCAGCAAAACTGACACCAGAGGAAGTGAAAGCAATGGAAAAGAAAGATGGGACTAATTACGGTGAAGGTGTGATCATAGGAGTTTTGGACACTGGGATATCTCCAGATCATCCCTCATTTAGTGATGAAGAAGTGCTACCTCCCCTGGTGAAATGGAAAGGCAAATGCGAGTTCAAGTTCAATGGGACAACAGTGTGCAACAACAAGCTTATTGGTGCAAGAAATTTCCAAGGTGGGAAAGAAACAAAAGAAGTCTCTCCATTTGGTGAAGAAGGCCATGACACTCTCACTTCTATCATAGCTGCTGGAAACTTTGTGAAAGGCGCCAACGTGTTTGGAATGGCAAATGGCCCAGCATCTGGCATTGCACCTTTGCTCATGTGGCCATCTACAAGGTTTGCACCGAGGCAGTTTGTGCCGAAAGTGACATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

156

Amino Acids

16.81

Weight (kDa)

6.29

Isoelectric Point (pI)

19.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 395
AcoI YGGCCR 2 cut(s) 24, 419
AcsI RAATTY 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 22, 395
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 2 cut(s) 211, 217
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 244, 338
AluI AGCT 2 cut(s) 244, 338
Alw26I GTCTC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 4 cut(s) 24, 310, 385, 419
ApeKI GCWGC 2 cut(s) 38, 338
ApoI RAATTY 1 cut(s) 259
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 3 cut(s) 110, 196, 314
BalI TGGCCA 2 cut(s) 26, 421
BanI GGYRCC 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbvI GCAGC 2 cut(s) 50, 325
BccI CCATC 2 cut(s) 77, 430
BciT130I CCWGG 1 cut(s) 182
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 469
BfoI RGCGCY 1 cut(s) 363
BisI GCNGC 2 cut(s) 39, 339
BlsI GCNGC 2 cut(s) 40, 340
Bme1390I CCNGG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 180, 265, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 395
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 2 cut(s) 75, 399
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 3 cut(s) 180, 265, 440
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 22, 395
BseMI GCAATG 2 cut(s) 75, 399
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 50, 325
BseYI CCCAGC 1 cut(s) 388
BshFI GGCC 4 cut(s) 26, 312, 387, 421
BshNI GGYRCC 1 cut(s) 359
BslFI GGGAC 2 cut(s) 100, 235
BslI CCNNNNNNNGG 2 cut(s) 22, 395
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 2 cut(s) 100, 235
BsnI GGCC 4 cut(s) 26, 312, 387, 421
Bsp143I GATC 2 cut(s) 108, 142
BspANI GGCC 4 cut(s) 26, 312, 387, 421
BspLI GGNNCC 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 75, 399
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 3 cut(s) 180, 265, 440
BssMI GATC 2 cut(s) 108, 142
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 98, 229
BstACI GRCGYC 1 cut(s) 360
BstAPI GCANNNNNTGC 1 cut(s) 451
BstF5I GGATG 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 2 cut(s) 111, 145
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 2 cut(s) 108, 142
BstMWI GCNNNNNNNGC 2 cut(s) 418, 451
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 50, 325
BsuRI GGCC 4 cut(s) 26, 312, 387, 421
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 126, 234
CaiI CAGNNNCTG 1 cut(s) 395
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 386
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 2 cut(s) 314, 415
CviJI RGCY 6 cut(s) 26, 244, 312, 338, 387, 421
CviKI_1 RGCY 6 cut(s) 26, 244, 312, 338, 387, 421
DinI GGCGCC 1 cut(s) 361
DpnI GATC 2 cut(s) 110, 144
DpnII GATC 2 cut(s) 108, 142
EaeI YGGCCR 2 cut(s) 24, 419
Eco130I CCWWGG 1 cut(s) 265
Eco32I GATATC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 180
EcoRV GATATC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 265
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 2 cut(s) 317, 418
FaiI YATR 5 cut(s) 13, 113, 315, 335, 416
FaqI GGGAC 2 cut(s) 100, 235
FatI CATG 2 cut(s) 313, 414
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 39, 339
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 39, 339
FspBI CTAG 1 cut(s) 469
GlaI GCGC 1 cut(s) 361
GluI GCNGC 2 cut(s) 39, 339
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 4 cut(s) 26, 312, 387, 421
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 2 cut(s) 317, 418
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 242
HphI GGTGA 3 cut(s) 110, 196, 314
Hpy166II GTNNAC 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 95, 302
HpyCH4III ACNGT 2 cut(s) 98, 229
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 5 cut(s) 38, 234, 254, 404, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 451
HpySE526I ACGT 1 cut(s) 366
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 2 cut(s) 317, 418
HspAI GCGC 1 cut(s) 360
KasI GGCGCC 1 cut(s) 359
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 108, 142
LpnPI CCDG 8 cut(s) 66, 114, 153, 167, 194, 327, 381, 402
Lsp1109I GCAGC 2 cut(s) 50, 325
LweI GCATC 1 cut(s) 401
MaeI CTAG 1 cut(s) 469
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 460
MalI GATC 2 cut(s) 110, 144
MboI GATC 2 cut(s) 108, 142
MboII GAAGA 2 cut(s) 176, 317
MlsI TGGCCA 2 cut(s) 26, 421
MluCI AATT 2 cut(s) 91, 259
MluNI TGGCCA 2 cut(s) 26, 421
Mly113I GGCGCC 1 cut(s) 360
MnlI CCTC 5 cut(s) 26, 49, 160, 186, 435
Mox20I TGGCCA 2 cut(s) 26, 421
MscI TGGCCA 2 cut(s) 26, 421
Msp20I TGGCCA 2 cut(s) 26, 421
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 418, 451
NarI GGCGCC 1 cut(s) 360
NdeII GATC 2 cut(s) 108, 142
NlaIII CATG 2 cut(s) 317, 418
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 460
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 2 cut(s) 40, 340
PluTI GGCGCC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 386
PstNI CAGNNNCTG 1 cut(s) 395
SatI GCNGC 2 cut(s) 39, 339
Sau3AI GATC 2 cut(s) 108, 142
Sau96I GGNCC 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 182
SetI ASST 9 cut(s) 18, 106, 178, 246, 271, 340, 369, 409, 434
SfaNI GCATC 1 cut(s) 401
SfoI GGCGCC 1 cut(s) 361
Sse9I AATT 2 cut(s) 91, 259
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 1 cut(s) 469
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 98, 229
TaiI ACGT 1 cut(s) 369
TasI AATT 2 cut(s) 91, 259
TscAI CASTG 2 cut(s) 133, 234
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 2 cut(s) 38, 338
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 133, 234
Van91I CCANNNNNTGG 1 cut(s) 395
XapI RAATTY 1 cut(s) 259
XspI CTAG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.