Rh1DG215700

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001420
Physical Location & Seq
Reverse (-)
42249668 .. 42253613
3946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG215700.1

Sequence Viewer

Length: 603 bp
ATGTGTGTTGGGAGTGAATATGTGGTTTTGTTATTTGGGAAATCGGAAAGAAGTGGATTTGATGTTGTTTATGGGTTTGCTTGTGGTGGTGGAACAGTTGAACTGAAGAAGCAGAGCTCGTGTTCTTTGCAATTGACCAACAAAACAGATAAATATGTGGCATTTAAGGTTAAGACAACCAATCCAAAGAAGTATTGTGTCAGACCCAATGCTGGTGTTGTTTTGCCCGGATCGACATGTGATGTTACAGTTACGATGCAAGCCCAAAAGGAGGCACCCCCAGATATGCAGTGTAAGGACAAATTTCTCCTTCAAAGTGTTTTTGCGCCAGATGGTTCAACTACAAAAGACATAACTCCTGAAATGTTCAACAAGGATGATGGTAAAGTTGTGGAAGAGTTCAAATTGCGGGTAATTTACTTTCCTGCCAACCCCCCGTCACCTGTCCCTGAAGGATCTGATGAGGGCTCTTCTCCCAGGGCAGTGGTTGAGAATGGGACTCAAAATCCTTCGTTGTTTGATGCTGTGTCAAGATCTCTTGAGCAACCAAAAGAGAAATCTTCAGAGGTGAGATCCCTTAGTAATCTTTTTGACAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

200

Amino Acids

21.82

Weight (kDa)

6.37

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HYDIN_VesB_CFA65-like_Ig PF22544 31 - 90 7e-06 HYDIN/CFA65/VesB-like, Ig-like domain
Motile_Sperm PF00635 34 - 125 1.7e-31 MSP (Major sperm protein) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 1 cut(s) 409
AclWI GGATC 3 cut(s) 238, 463, 567
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 3 cut(s) 125, 471, 546
AfiI CCNNNNNNNGG 2 cut(s) 212, 271
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 5 cut(s) 101, 314, 339, 370, 403
AjnI CCWGG 1 cut(s) 476
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 3 cut(s) 238, 463, 567
ApoI RAATTY 1 cut(s) 302
AspLEI GCGC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 432, 580
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 2 cut(s) 119, 470
BauI CACGAG 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 2 cut(s) 326, 374
BciT130I CCWGG 1 cut(s) 478
BcnI CCSGG 1 cut(s) 228
BglII AGATCT 1 cut(s) 533
Bme1390I CCNGG 2 cut(s) 228, 478
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 228, 478
BmsI GCATC 2 cut(s) 246, 511
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 476, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 271
BseBI CCWGG 1 cut(s) 478
BseDI CCNNGG 2 cut(s) 476, 477
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 2 cut(s) 212, 271
BshNI GGYRCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 431, 511
BslI CCNNNNNNNGG 2 cut(s) 212, 271
BsmFI GGGAC 2 cut(s) 431, 511
Bsp1286I GDGCHC 2 cut(s) 119, 470
Bsp143I GATC 4 cut(s) 230, 455, 533, 572
BspACI CCGC 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 3 cut(s) 238, 463, 567
BspQI GCTCTTC 1 cut(s) 475
BspT107I GGYRCC 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 476, 477
BssMI GATC 4 cut(s) 230, 455, 533, 572
BssSI CACGAG 1 cut(s) 118
Bst2BI CACGAG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 478
Bst4CI ACNGT 2 cut(s) 97, 250
Bst6I CTCTTC 2 cut(s) 390, 475
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 578
BstF5I GGATG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 4 cut(s) 233, 458, 536, 575
BstMBI GATC 4 cut(s) 230, 455, 533, 572
BstNI CCWGG 1 cut(s) 478
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 226, 476
BstX2I RGATCY 3 cut(s) 455, 533, 572
BstXI CCANNNNNNTGG 1 cut(s) 484
BstYI RGATCY 3 cut(s) 455, 533, 572
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 2 cut(s) 296, 489
BtsIMutI CAGTG 2 cut(s) 296, 489
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 1 cut(s) 328
CviAII CATG 1 cut(s) 237
CviJI RGCY 3 cut(s) 117, 263, 468
CviKI_1 RGCY 3 cut(s) 117, 263, 468
DdeI CTNAG 1 cut(s) 578
DpnI GATC 4 cut(s) 232, 457, 535, 574
DpnII GATC 4 cut(s) 230, 455, 533, 572
Eam1104I CTCTTC 2 cut(s) 390, 475
EarI CTCTTC 2 cut(s) 390, 475
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 119, 470
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 3 cut(s) 125, 471, 546
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 476
EcoT38I GRGCYC 2 cut(s) 119, 470
FaeI CATG 1 cut(s) 240
FaiI YATR 6 cut(s) 21, 72, 156, 238, 287, 353
FaqI GGGAC 2 cut(s) 431, 511
FatI CATG 1 cut(s) 236
FauI CCCGC 1 cut(s) 402
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 2 cut(s) 119, 470
GlaI GCGC 1 cut(s) 327
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 328
Hin1II CATG 1 cut(s) 240
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 1 cut(s) 499
HpaII CCGG 1 cut(s) 228
HphI GGTGA 2 cut(s) 432, 580
Hpy188I TCNGA 4 cut(s) 46, 203, 460, 565
Hpy188III TCNNGA 3 cut(s) 359, 531, 539
HpyAV CCTTC 3 cut(s) 320, 446, 519
HpyCH4III ACNGT 2 cut(s) 97, 250
HpyCH4V TGCA 3 cut(s) 130, 259, 289
HpyF3I CTNAG 1 cut(s) 578
Hsp92II CATG 1 cut(s) 240
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 4 cut(s) 230, 455, 533, 572
LguI GCTCTTC 1 cut(s) 475
LweI GCATC 2 cut(s) 246, 511
MaeIII GTNAC 3 cut(s) 244, 250, 438
MalI GATC 4 cut(s) 232, 457, 535, 574
MboI GATC 4 cut(s) 230, 455, 533, 572
MboII GAAGA 4 cut(s) 118, 407, 462, 552
MfeI CAATTG 1 cut(s) 131
MflI RGATCY 3 cut(s) 455, 533, 572
MhlI GDGCHC 2 cut(s) 119, 470
MluCI AATT 4 cut(s) 131, 302, 404, 414
MlyI GAGTC 1 cut(s) 493
MnlI CCTC 3 cut(s) 265, 457, 559
MseI TTAA 2 cut(s) 165, 171
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 228, 478
MunI CAATTG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 478
NciI CCSGG 1 cut(s) 228
NdeII GATC 4 cut(s) 230, 455, 533, 572
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 438
NspI RCATGY 1 cut(s) 240
PasI CCCWGGG 1 cut(s) 477
PciI ACATGT 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 475
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PscI ACATGT 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 476
PspGI CCWGG 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 276
PsuI RGATCY 3 cut(s) 455, 533, 572
SacI GAGCTC 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 475
SaqAI TTAA 2 cut(s) 165, 171
Sau3AI GATC 4 cut(s) 230, 455, 533, 572
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 2 cut(s) 228, 478
SduI GDGCHC 2 cut(s) 119, 470
SetI ASST 4 cut(s) 119, 171, 445, 570
SfaNI GCATC 2 cut(s) 246, 511
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 4 cut(s) 131, 302, 404, 414
SsiI CCGC 1 cut(s) 409
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 226, 476
TaaI ACNGT 2 cut(s) 97, 250
TaqI TCGA 1 cut(s) 233
TasI AATT 4 cut(s) 131, 302, 404, 414
Tru1I TTAA 2 cut(s) 165, 171
Tru9I TTAA 2 cut(s) 165, 171
TscAI CASTG 2 cut(s) 296, 489
TseFI GTSAC 1 cut(s) 438
Tsp45I GTSAC 1 cut(s) 438
TspRI CASTG 2 cut(s) 296, 489
XapI RAATTY 1 cut(s) 302
XceI RCATGY 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.