Prupe.2G139900_v2.0.a1

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001420
Physical Location & Seq
Reverse (-)
19671698 .. 19675954
4257 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G139900.1

Sequence Viewer

Length: 717 bp
ATGAGTACTGGAGATCTTCTTAGCATTCAGCCCACAGAGCTCAAATTCCCATTTGAAGTGAAGAAGCAGAGCTCGTGTTCCTTGCAATTGACCAACAAAACAGATAAATATGTGGCGTTCAAGGTTAAAACAACCAATCCAAAAAAATACTGCGTCCGGCCCAATGCCGGAATTGTTTTGCCCGGAACAACATGTGATGTTACAGTTACAATGCAAGCACAAAAAGAGGCACCCCCAGATATGCAGTGCAAGGACAAATTTCTCCTTCAAAGTGTTGTTGCACCAGATGGTGTAACTCCGAAAGACATTACGCCTGAAATGTTCAACAAGGAGGATGGTAAGGTTGTGGGAGAGTTCAAATTGCGGGTAGTCTACTTTCCTGCGAATCCCCCATCACCTGTCCCTGAAGGATCTGACGAAGGCTCTTCTCCCAGGGCTTCAGTGCTTGATAATGGGAATCAAAACACTTCCTTGTTTGATGCTGTATCAAGATCTCTTGAGGAACCGAAAGAGAAGTCATCAGAGGCATGGTCCATGATTTCCAAGTTGACTGAGGAGAAGACCTCTGCTTTGCAACAAAGTCAGAAACTACATCGTGAACTGGACCTGTTGAGAAAAGAACTAAGCAAAAACGGCGGGGGTGGATTTTCATTATTGTTTGTGGTGCTCTTTGGTCTTTTGGGCATCTTGGTTGGTTACTTCATCAGGAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

239

Amino Acids

26.18

Weight (kDa)

8.56

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 372
AciI CCGC 2 cut(s) 364, 636
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 2 cut(s) 44, 257
AcuI CTGAAG 2 cut(s) 423, 426
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 5 cut(s) 56, 121, 269, 325, 358
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 2 cut(s) 40, 72
AluI AGCT 2 cut(s) 40, 72
Alw21I GWGCWC 3 cut(s) 42, 74, 669
AlwI GGATC 1 cut(s) 418
AoxI GGCC 1 cut(s) 158
ApoI RAATTY 2 cut(s) 44, 257
ArsI GACNNNNNNTTYG 4 cut(s) 500, 532, 553, 585
AspS9I GGNCC 3 cut(s) 159, 531, 604
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 387
AvaII GGWCC 2 cut(s) 531, 604
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 2 cut(s) 42, 74
BauI CACGAG 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 3 cut(s) 42, 74, 669
BccI CCATC 3 cut(s) 281, 329, 400
BceAI ACGGC 1 cut(s) 649
BciT130I CCWGG 1 cut(s) 433
BcnI CCSGG 1 cut(s) 183
BglII AGATCT 2 cut(s) 13, 491
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 183, 433
Bme18I GGWCC 2 cut(s) 531, 604
BmgT120I GGNCC 3 cut(s) 159, 531, 604
BmiI GGNNCC 2 cut(s) 231, 504
BmrFI CCNGG 2 cut(s) 183, 433
BmsI GCATC 2 cut(s) 469, 693
BpiI GAAGAC 1 cut(s) 566
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 431, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 13, 606
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 431, 432
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 2 cut(s) 13, 606
BseRI GAGGAG 1 cut(s) 569
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 3 cut(s) 42, 74, 669
BsiSI CCGG 3 cut(s) 157, 168, 183
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 1 cut(s) 160
Bsp1286I GDGCHC 3 cut(s) 42, 74, 669
Bsp143I GATC 3 cut(s) 13, 410, 491
BspACI CCGC 2 cut(s) 364, 636
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 231, 504
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 229
BsrI ACTGG 2 cut(s) 13, 606
BssECI CCNNGG 2 cut(s) 431, 432
BssMI GATC 3 cut(s) 13, 410, 491
BssSI CACGAG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 20, 552, 623
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 3 cut(s) 16, 413, 494
BstMBI GATC 3 cut(s) 13, 410, 491
BstMWI GCNNNNNNNGC 2 cut(s) 37, 633
BstNI CCWGG 1 cut(s) 433
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 181, 431
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 3 cut(s) 13, 410, 491
BstYI RGATCY 3 cut(s) 13, 410, 491
BsuRI GGCC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 251, 447
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 3 cut(s) 159, 531, 604
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 6
CviAII CATG 3 cut(s) 192, 528, 535
CviJI RGCY 6 cut(s) 31, 40, 72, 160, 423, 437
CviKI_1 RGCY 6 cut(s) 31, 40, 72, 160, 423, 437
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 3 cut(s) 20, 552, 623
DpnI GATC 3 cut(s) 15, 412, 493
DpnII GATC 3 cut(s) 13, 410, 491
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Ecl136II GAGCTC 2 cut(s) 40, 72
Eco24I GRGCYC 2 cut(s) 42, 74
Eco47I GGWCC 2 cut(s) 531, 604
Eco53kI GAGCTC 2 cut(s) 40, 72
Eco57I CTGAAG 2 cut(s) 423, 426
EcoICRI GAGCTC 2 cut(s) 40, 72
EcoRII CCWGG 1 cut(s) 431
EcoT38I GRGCYC 2 cut(s) 42, 74
FaeI CATG 3 cut(s) 195, 531, 538
FaiI YATR 6 cut(s) 111, 193, 242, 529, 536, 715
FaqI GGGAC 1 cut(s) 386
FatI CATG 3 cut(s) 191, 527, 534
FauI CCCGC 2 cut(s) 357, 629
FblI GTMKAC 1 cut(s) 372
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 2 cut(s) 42, 74
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 160
HapII CCGG 3 cut(s) 157, 168, 183
HgaI GACGC 1 cut(s) 142
Hin1II CATG 3 cut(s) 195, 531, 538
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 2 cut(s) 385, 457
HpaII CCGG 3 cut(s) 157, 168, 183
HphI GGTGA 1 cut(s) 387
Hpy166II GTNNAC 3 cut(s) 373, 549, 599
Hpy188I TCNGA 4 cut(s) 300, 415, 523, 585
Hpy188III TCNNGA 4 cut(s) 489, 497, 596, 706
Hpy8I GTNNAC 3 cut(s) 373, 549, 599
HpyAV CCTTC 3 cut(s) 275, 401, 413
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 6 cut(s) 85, 214, 244, 249, 281, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 633
HpyF3I CTNAG 3 cut(s) 20, 552, 623
Hsp92II CATG 3 cut(s) 195, 531, 538
Kzo9I GATC 3 cut(s) 13, 410, 491
LguI GCTCTTC 1 cut(s) 430
LweI GCATC 2 cut(s) 469, 693
MaeIII GTNAC 4 cut(s) 199, 205, 292, 695
MalI GATC 3 cut(s) 15, 412, 493
MboI GATC 3 cut(s) 13, 410, 491
MboII GAAGA 4 cut(s) 8, 73, 417, 571
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 3 cut(s) 13, 410, 491
MhlI GDGCHC 3 cut(s) 42, 74, 669
MluCI AATT 5 cut(s) 44, 86, 171, 257, 359
MnlI CCTC 6 cut(s) 220, 325, 493, 517, 547, 574
MseI TTAA 1 cut(s) 126
MspI CCGG 3 cut(s) 157, 168, 183
MspR9I CCNGG 2 cut(s) 183, 433
MunI CAATTG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 2 cut(s) 37, 633
NciI CCSGG 1 cut(s) 183
NdeII GATC 3 cut(s) 13, 410, 491
NlaIII CATG 3 cut(s) 195, 531, 538
NlaIV GGNNCC 2 cut(s) 231, 504
NspI RCATGY 1 cut(s) 195
PasI CCCWGGG 1 cut(s) 432
PciI ACATGT 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 430
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 385, 457
PscI ACATGT 1 cut(s) 191
Psp124BI GAGCTC 2 cut(s) 42, 74
Psp6I CCWGG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 431
PspN4I GGNNCC 2 cut(s) 231, 504
PspPI GGNCC 3 cut(s) 159, 531, 604
PsuI RGATCY 3 cut(s) 13, 410, 491
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SacI GAGCTC 2 cut(s) 42, 74
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 3 cut(s) 13, 410, 491
Sau96I GGNCC 3 cut(s) 159, 531, 604
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 183, 433
SduI GDGCHC 3 cut(s) 42, 74, 669
SetI ASST 7 cut(s) 42, 74, 126, 345, 400, 566, 609
SfaNI GCATC 2 cut(s) 469, 693
SinI GGWCC 2 cut(s) 531, 604
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 5 cut(s) 44, 86, 171, 257, 359
SsiI CCGC 2 cut(s) 364, 636
SstI GAGCTC 2 cut(s) 42, 74
StyD4I CCNGG 2 cut(s) 181, 431
TaaI ACNGT 1 cut(s) 205
TasI AATT 5 cut(s) 44, 86, 171, 257, 359
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 2 cut(s) 385, 457
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 251, 447
TspDTI ATGAA 2 cut(s) 639, 691
TspRI CASTG 2 cut(s) 251, 447
VpaK11BI GGWCC 2 cut(s) 531, 604
XapI RAATTY 2 cut(s) 44, 257
XceI RCATGY 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 372
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.