FvH4_7g11210

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001420
Physical Location & Seq
Reverse (-)
10444966 .. 10448676
3711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11210.t2

Sequence Viewer

Length: 714 bp
ATGAGCACCGGAGATCTTCTCGGCATTCAGCCCACCGAGCTCAAATTTCCATTTGAACTGAAGAAGCAGAGCTCATGTTCGTTGCAATTGACCAACAAAACAGATAAACATGTGGCCTTCAAGGTTAAAACGACCAATCCGAAAAAGTATTGTGTCCGACCCAATGCTGGTGTTGTTTTGCCTGGATCGACATGTGATGTTACTGTTACAATGCAAGCCCAAAAAGAGGCACCCCCAGATATGCAGTGCAAGGACAAATTTCTCCTTCAAAGTGTTGTTGCACCAGATGGTTCAACTACAAAAGACATAACTCCTGAAATGTTCAACAAGGAGGATGGTAAAGTGGTGGAAGAGTTCAAATTGCGGGTAATATACTTTCCTGCCAACCCCCCGTCACCTGTCCCGGAAGGATCTGATGAGGGCTCTTCTCCCAGGGCAGTGGTTGAGAATGGGACTCAAAATTCGTCCTTGTTTGATGCTGTATCAAGATCTCTTGAGGAACCAAAAGAGAAATCTTCAGAGGCCTGGTCTATGATATCCAAGTTGACCGAAGAGAAGACTGCTGCTCTACAACAAAATCAGAAACTACGTCAAGAGCTGGAACTGGTGAGAAAAGAAATCAGCAAAAGCAGTGGTGGTGGATTTTCATTAGTCTTTGTAGTGCTCTTTGGTCTTTTGGGTATCTTGGTTGGTTTCTTCGTCAAGAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

238

Amino Acids

26.01

Weight (kDa)

8.24

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Motile_Sperm PF00635 7 - 110 2.3e-35 MSP (Major sperm protein) domain
Cep192_D6 PF22076 9 - 78 1.8e-07 Cep192 domain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 1 cut(s) 364
AclWI GGATC 2 cut(s) 193, 418
AcsI RAATTY 3 cut(s) 44, 257, 460
AcuI CTGAAG 2 cut(s) 80, 501
AfiI CCNNNNNNNGG 2 cut(s) 167, 226
AflIII ACRYGT 2 cut(s) 109, 191
AgsI TTSAA 6 cut(s) 56, 121, 269, 294, 325, 358
AjnI CCWGG 3 cut(s) 181, 431, 524
AluBI AGCT 3 cut(s) 40, 72, 598
AluI AGCT 3 cut(s) 40, 72, 598
Alw21I GWGCWC 4 cut(s) 8, 42, 74, 666
AlwI GGATC 2 cut(s) 193, 418
AoxI GGCC 2 cut(s) 114, 522
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 3 cut(s) 44, 257, 460
ArsI GACNNNNNNTTYG 2 cut(s) 445, 477
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 387, 619
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 3 cut(s) 42, 74, 425
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 4 cut(s) 8, 42, 74, 666
BbvI GCAGC 1 cut(s) 550
BccI CCATC 2 cut(s) 281, 329
BciT130I CCWGG 3 cut(s) 183, 433, 526
BcnI CCSGG 1 cut(s) 404
BglII AGATCT 2 cut(s) 13, 488
BisI GCNGC 1 cut(s) 564
BlsI GCNGC 1 cut(s) 565
Bme1390I CCNGG 4 cut(s) 183, 404, 433, 526
BmiI GGNNCC 2 cut(s) 231, 501
BmrFI CCNGG 4 cut(s) 183, 404, 433, 526
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 563
BplI GAGNNNNNCTC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 431, 432
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 226
Bse1I ACTGG 1 cut(s) 609
BseBI CCWGG 3 cut(s) 183, 433, 526
BseDI CCNNGG 2 cut(s) 431, 432
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 167, 226
BseNI ACTGG 1 cut(s) 609
BseXI GCAGC 1 cut(s) 550
BshFI GGCC 2 cut(s) 116, 524
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 4 cut(s) 8, 42, 74, 666
BsiSI CCGG 2 cut(s) 9, 404
BslFI GGGAC 2 cut(s) 386, 466
BslI CCNNNNNNNGG 2 cut(s) 167, 226
BsmFI GGGAC 2 cut(s) 386, 466
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 2 cut(s) 116, 524
Bsp1286I GDGCHC 5 cut(s) 8, 42, 74, 425, 666
Bsp143I GATC 4 cut(s) 13, 185, 410, 488
BspACI CCGC 1 cut(s) 364
BspANI GGCC 2 cut(s) 116, 524
BspLI GGNNCC 2 cut(s) 231, 501
BspPI GGATC 2 cut(s) 193, 418
BspQI GCTCTTC 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 609
BssECI CCNNGG 2 cut(s) 431, 432
BssMI GATC 4 cut(s) 13, 185, 410, 488
Bst2UI CCWGG 3 cut(s) 183, 433, 526
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 3 cut(s) 345, 430, 546
BstC8I GCNNGC 1 cut(s) 216
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 4 cut(s) 16, 188, 413, 491
BstMBI GATC 4 cut(s) 13, 185, 410, 488
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 3 cut(s) 183, 433, 526
BstNSI RCATGY 2 cut(s) 113, 195
BstSCI CCNGG 4 cut(s) 181, 402, 431, 524
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 3 cut(s) 13, 410, 488
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 3 cut(s) 13, 410, 488
BsuRI GGCC 2 cut(s) 116, 524
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 3 cut(s) 251, 444, 637
BtsIMutI CAGTG 3 cut(s) 251, 444, 637
Cac8I GCNNGC 1 cut(s) 216
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviAII CATG 3 cut(s) 75, 110, 192
CviJI RGCY 8 cut(s) 31, 40, 72, 116, 218, 423, 524, 598
CviKI_1 RGCY 8 cut(s) 31, 40, 72, 116, 218, 423, 524, 598
DpnI GATC 4 cut(s) 15, 187, 412, 490
DpnII GATC 4 cut(s) 13, 185, 410, 488
Eam1104I CTCTTC 3 cut(s) 345, 430, 546
EarI CTCTTC 3 cut(s) 345, 430, 546
Ecl136II GAGCTC 2 cut(s) 40, 72
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 3 cut(s) 42, 74, 425
Eco32I GATATC 1 cut(s) 537
Eco53kI GAGCTC 2 cut(s) 40, 72
Eco57I CTGAAG 2 cut(s) 80, 501
EcoICRI GAGCTC 2 cut(s) 40, 72
EcoRII CCWGG 3 cut(s) 181, 431, 524
EcoRV GATATC 1 cut(s) 537
EcoT38I GRGCYC 3 cut(s) 42, 74, 425
FaeI CATG 3 cut(s) 78, 113, 195
FaiI YATR 8 cut(s) 76, 111, 193, 242, 308, 373, 533, 712
FaqI GGGAC 2 cut(s) 386, 466
FatI CATG 3 cut(s) 74, 109, 191
FauI CCCGC 1 cut(s) 357
Fnu4HI GCNGC 1 cut(s) 564
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 3 cut(s) 42, 74, 425
Fsp4HI GCNGC 1 cut(s) 564
GluI GCNGC 1 cut(s) 564
HaeIII GGCC 2 cut(s) 116, 524
HapII CCGG 2 cut(s) 9, 404
Hin1II CATG 3 cut(s) 78, 113, 195
HincII GTYRAC 1 cut(s) 546
HindII GTYRAC 1 cut(s) 546
HinfI GANTC 1 cut(s) 454
HpaII CCGG 2 cut(s) 9, 404
HphI GGTGA 2 cut(s) 387, 619
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 5 cut(s) 141, 158, 415, 520, 582
Hpy188III TCNNGA 5 cut(s) 314, 486, 494, 593, 703
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 3 cut(s) 127, 275, 401
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 5 cut(s) 85, 214, 244, 249, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 589
Hsp92II CATG 3 cut(s) 78, 113, 195
Kzo9I GATC 4 cut(s) 13, 185, 410, 488
LguI GCTCTTC 1 cut(s) 430
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 1 cut(s) 466
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 3 cut(s) 199, 205, 393
MalI GATC 4 cut(s) 15, 187, 412, 490
MboI GATC 4 cut(s) 13, 185, 410, 488
MboII GAAGA 8 cut(s) 8, 73, 362, 417, 507, 563, 568, 688
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 3 cut(s) 13, 410, 488
MhlI GDGCHC 5 cut(s) 8, 42, 74, 425, 666
MluCI AATT 5 cut(s) 44, 86, 257, 359, 460
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 5 cut(s) 220, 325, 412, 490, 514
MseI TTAA 1 cut(s) 126
MspI CCGG 2 cut(s) 9, 404
MspR9I CCNGG 4 cut(s) 183, 404, 433, 526
MunI CAATTG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 3 cut(s) 183, 433, 526
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 404
NdeII GATC 4 cut(s) 13, 185, 410, 488
NlaIII CATG 3 cut(s) 78, 113, 195
NlaIV GGNNCC 2 cut(s) 231, 501
NmuCI GTSAC 1 cut(s) 393
NspI RCATGY 2 cut(s) 113, 195
PasI CCCWGGG 1 cut(s) 432
PceI AGGCCT 1 cut(s) 524
PciI ACATGT 2 cut(s) 109, 191
PciSI GCTCTTC 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PctI GAATGC 1 cut(s) 24
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 1 cut(s) 565
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PscI ACATGT 2 cut(s) 109, 191
Psp124BI GAGCTC 2 cut(s) 42, 74
Psp6I CCWGG 3 cut(s) 181, 431, 524
PspGI CCWGG 3 cut(s) 181, 431, 524
PspN4I GGNNCC 2 cut(s) 231, 501
PsuI RGATCY 3 cut(s) 13, 410, 488
SacI GAGCTC 2 cut(s) 42, 74
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 564
Sau3AI GATC 4 cut(s) 13, 185, 410, 488
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 4 cut(s) 183, 404, 433, 526
SduI GDGCHC 5 cut(s) 8, 42, 74, 425, 666
SetI ASST 6 cut(s) 42, 74, 126, 400, 592, 600
SfaNI GCATC 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 5 cut(s) 44, 86, 257, 359, 460
SseBI AGGCCT 1 cut(s) 524
SsiI CCGC 1 cut(s) 364
SstI GAGCTC 2 cut(s) 42, 74
StuI AGGCCT 1 cut(s) 524
StyD4I CCNGG 4 cut(s) 181, 402, 431, 524
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 592
TaqI TCGA 1 cut(s) 188
TaqII GACCGA 1 cut(s) 563
TasI AATT 5 cut(s) 44, 86, 257, 359, 460
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 3 cut(s) 251, 444, 637
TseFI GTSAC 1 cut(s) 393
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 1 cut(s) 393
TspDTI ATGAA 1 cut(s) 636
TspRI CASTG 3 cut(s) 251, 444, 637
XapI RAATTY 3 cut(s) 44, 257, 460
XceI RCATGY 2 cut(s) 113, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.