Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Forward (+)

10397152 .. 10402429

Gene Structure 5278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G010320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAATGCAAGGACAAGTTTCTCCTTCAGAGTGTAAAAACGAATGATGGTGCAACTCCAAAGGAGATTACTCTAGAAGTGTTCAATGAAGAGGCAGGACATGTGGTTGAGGAGTGCAAATTCAGAGTGGTGTATGTTTCTCCACCTCAGCCCCCTTCTCCGGTCTCAGAAAGGTCGGAGGAAGGGTCTTCACCAAGAGCTTCAATAGTGGAGAATGAAAATCTTAATGCTGCTGAGTTTGCCAATGCTGCAAAAGGACTTTCGGAGCAGCTTGAACCTCTGGGGAGATCCGCAGAGGTTCCCAAAATTGGTAATCAAAATAAAAACCGGACTGAAAGTTCTCGACGGCAGACATCATCAAATCCATTACTCTGTTGGACATCCTCGCCATCACTGGCCTTCCCATCGATGGCGAGCCGTATGTGCATGGTCAATTTGACTCTGCCGACTTCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

152

Amino Acids

16.59

Weight (kDa)

5.53

Isoelectric Point (pI)

79.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	11
AfiI	CCNNNNNNNGG	3 cut(s)	160, 308, 409
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	85, 204, 275
AloI	GAACNNNNNNTCC	2 cut(s)	322, 354
AluBI	AGCT	2 cut(s)	200, 271
AluI	AGCT	2 cut(s)	200, 271
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	3 cut(s)	230, 248, 268
ApoI	RAATTY	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	183, 444
BbsI	GAAGAC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	217, 235, 280
BccI	CCATC	4 cut(s)	41, 397, 403, 412
BceAI	ACGGC	2 cut(s)	362, 402
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	231, 249, 269
BlsI	GCNGC	3 cut(s)	232, 250, 270
BmiI	GGNNCC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	169
BsaWI	WCCGGW	2 cut(s)	160, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 308, 409
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	11
BseCI	ATCGAT	1 cut(s)	407
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	3 cut(s)	160, 308, 409
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	3 cut(s)	161, 180, 225
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	217, 235, 280
BshFI	GGCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	161, 328
BslI	CCNNNNNNNGG	3 cut(s)	160, 308, 409
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	398
Bso31I	GGTCTC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	287
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	3 cut(s)	160, 179, 226
BspDI	ATCGAT	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	399
BssMI	GATC	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	3 cut(s)	147, 166, 234
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	1 cut(s)	290
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 248, 423
BstNSI	RCATGY	1 cut(s)	104
BstV1I	GCAGC	3 cut(s)	217, 235, 280
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	398
BsuTUI	ATCGAT	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	415
ClaI	ATCGAT	1 cut(s)	407
CviAII	CATG	2 cut(s)	101, 427
CviJI	RGCY	5 cut(s)	151, 200, 271, 398, 417
CviKI_1	RGCY	5 cut(s)	151, 200, 271, 398, 417
DdeI	CTNAG	3 cut(s)	147, 166, 234
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	11
FaeI	CATG	2 cut(s)	104, 430
FaiI	YATR	4 cut(s)	102, 135, 422, 428
FatI	CATG	2 cut(s)	100, 426
Fnu4HI	GCNGC	3 cut(s)	231, 249, 269
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	3 cut(s)	231, 249, 269
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	3 cut(s)	231, 249, 269
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	2 cut(s)	161, 328
Hin1II	CATG	2 cut(s)	104, 430
HinfI	GANTC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	161, 328
HphI	GGTGA	2 cut(s)	183, 444
Hpy188I	TCNGA	5 cut(s)	30, 125, 169, 178, 265
Hpy188III	TCNNGA	2 cut(s)	74, 342
Hpy99I	CGWCG	1 cut(s)	348
HpyAV	CCTTC	4 cut(s)	35, 165, 176, 409
HpyCH4V	TGCA	6 cut(s)	4, 9, 53, 117, 251, 426
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 248, 423
HpyF3I	CTNAG	3 cut(s)	147, 166, 234
Hsp92II	CATG	2 cut(s)	104, 430
Kzo9I	GATC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	5 cut(s)	81, 174, 266, 341, 380
Lsp1109I	GCAGC	3 cut(s)	217, 235, 280
MaeI	CTAG	1 cut(s)	74
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MboII	GAAGA	2 cut(s)	101, 180
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	3 cut(s)	119, 306, 433
MlyI	GAGTC	1 cut(s)	433
MmeI	TCCRAC	2 cut(s)	156, 356
MnlI	CCTC	7 cut(s)	85, 103, 156, 172, 288, 289, 394
MseI	TTAA	1 cut(s)	225
MspI	CCGG	2 cut(s)	161, 328
MwoI	GCNNNNNNNGC	3 cut(s)	239, 248, 423
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	104, 430
NlaIV	GGNNCC	1 cut(s)	300
NspI	RCATGY	1 cut(s)	104
PciI	ACATGT	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	232, 250, 270
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PscI	ACATGT	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	3 cut(s)	231, 249, 269
Sau3AI	GATC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	433
SetI	ASST	7 cut(s)	148, 176, 202, 273, 280, 300, 457
Sse9I	AATT	3 cut(s)	119, 306, 433
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	74
TaqI	TCGA	2 cut(s)	343, 407
TasI	AATT	3 cut(s)	119, 306, 433
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	3 cut(s)	230, 248, 268
TspDTI	ATGAA	2 cut(s)	102, 231
TspRI	CASTG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	372
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.