Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Reverse (-)

14193122 .. 14198788

Gene Structure 5667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1116700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTACTGGGGATCTTCTTAGCATTCAGCCTTTAGAGCTCAAATTCCCATTTGAAGTGAAGAAACAGAGTTCATGTTCCTTGCAATTGACCAACAAAACAACTAATTATGTGGCCTTCAAGGTTAAAACAACCAATCCGAAAAAGTACTGTGTCCGGCCCAATGCTGGTGTTATCTTACCCGGAACAACATGTGATGTTACAGTTACAATGCAAGCCCAAAAGGAGGCTCCGCCAGACATGCAGTGCAAGGACAAATTTCTCCTTCAAAGTGTTGTTGCACCAGAAGGTGCAACTATGAAAGACATAACTCCTGAAATGTTCAACAAGGAGGATGGTAAAATTGTGGAAGAGTTCAAATTGCGGGTAATCTACTTTCCTGCCAACCCCCCATCACCTGTCCCTGAAGGATCTGACGAGGGCTCCTCTCCGAAGGCTTCAGTGCTTGATAATGGGAATCAAAACTCTTCCTTGTTTGATGCTGTATCAAGATCTCTTGAGGAAACAAAAGAGAAGTCGTCAGAGGCATGGCCTATGATTTCCAAGTTAACTGAAGAGAAGACTGCTGCTTTGCAACAAACTCAGAAGCTACGCCACGAACTGGATGTGTTGAGAAAAGAAATTAGCAAAAACAGCGGTGGGGGATTTTCATTATTGTTTGTGGTGCTGTTCGGTCTTTTAGGCATCTTGGTTGGCTACTTCATCAACAAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

239

Amino Acids

26.23

Weight (kDa)

7.58

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	4.2e-33	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	601
AciI	CCGC	3 cut(s)	233, 364, 636
AclWI	GGATC	2 cut(s)	21, 418
AcsI	RAATTY	2 cut(s)	44, 257
AcuI	CTGAAG	3 cut(s)	423, 426, 573
AfaI	GTAC	2 cut(s)	7, 149
AfiI	CCNNNNNNNGG	3 cut(s)	167, 226, 601
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	56, 121, 269, 325, 358
AluBI	AGCT	2 cut(s)	40, 589
AluI	AGCT	2 cut(s)	40, 589
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	21, 418
AoxI	GGCC	3 cut(s)	114, 158, 530
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	2 cut(s)	44, 257
ArsI	GACNNNNNNTTYG	4 cut(s)	500, 532, 553, 585
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	387
BanII	GRGCYC	2 cut(s)	42, 425
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	2 cut(s)	329, 400
BcnI	CCSGG	1 cut(s)	183
BglII	AGATCT	1 cut(s)	491
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
BmcAI	AGTACT	2 cut(s)	7, 149
Bme1390I	CCNGG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	231, 424
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	469, 693
BmuI	ACTGGG	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	566
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 226, 601
Bse1I	ACTGG	2 cut(s)	13, 606
BseGI	GGATG	2 cut(s)	340, 610
BseLI	CCNNNNNNNGG	3 cut(s)	167, 226, 601
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	13, 606
BseRI	GAGGAG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	553
BshFI	GGCC	3 cut(s)	116, 160, 532
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	157, 183
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	3 cut(s)	167, 226, 601
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	116, 160, 532
Bsp1286I	GDGCHC	2 cut(s)	42, 425
Bsp143I	GATC	3 cut(s)	13, 410, 491
BspACI	CCGC	3 cut(s)	233, 364, 636
BspANI	GGCC	3 cut(s)	116, 160, 532
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	2 cut(s)	231, 424
BspPI	GGATC	2 cut(s)	21, 418
BsrI	ACTGG	2 cut(s)	13, 606
BssMI	GATC	3 cut(s)	13, 410, 491
Bst4CI	ACNGT	2 cut(s)	152, 205
Bst6I	CTCTTC	3 cut(s)	345, 472, 549
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	20, 582
BstF5I	GGATG	2 cut(s)	340, 610
BstKTI	GATC	3 cut(s)	16, 413, 494
BstMBI	GATC	3 cut(s)	13, 410, 491
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 241, 633
BstNSI	RCATGY	2 cut(s)	195, 244
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	553
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	3 cut(s)	13, 410, 491
BstYI	RGATCY	3 cut(s)	13, 410, 491
BsuRI	GGCC	3 cut(s)	116, 160, 532
BtsCI	GGATG	2 cut(s)	340, 610
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	2 cut(s)	251, 447
Cac8I	GCNNGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	6, 148
CviAII	CATG	4 cut(s)	75, 192, 241, 528
CviQI	GTAC	2 cut(s)	6, 148
DdeI	CTNAG	2 cut(s)	20, 582
DpnI	GATC	3 cut(s)	15, 412, 493
DpnII	GATC	3 cut(s)	13, 410, 491
Eam1104I	CTCTTC	3 cut(s)	345, 472, 549
EarI	CTCTTC	3 cut(s)	345, 472, 549
EciI	GGCGGA	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	2 cut(s)	42, 425
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	423, 426, 573
EcoICRI	GAGCTC	1 cut(s)	40
EcoT38I	GRGCYC	2 cut(s)	42, 425
FaeI	CATG	4 cut(s)	78, 195, 244, 531
FaiI	YATR	9 cut(s)	76, 111, 193, 242, 299, 308, 529, 536, 715
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	4 cut(s)	74, 191, 240, 527
FauI	CCCGC	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	2 cut(s)	347, 617
FriOI	GRGCYC	2 cut(s)	42, 425
Fsp4HI	GCNGC	1 cut(s)	567
GluI	GCNGC	1 cut(s)	567
HaeIII	GGCC	3 cut(s)	116, 160, 532
HapII	CCGG	2 cut(s)	157, 183
Hin1II	CATG	4 cut(s)	78, 195, 244, 531
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HinfI	GANTC	1 cut(s)	457
HpaI	GTTAAC	1 cut(s)	549
HpaII	CCGG	2 cut(s)	157, 183
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	5 cut(s)	141, 415, 432, 523, 585
Hpy188III	TCNNGA	3 cut(s)	314, 489, 497
Hpy8I	GTNNAC	1 cut(s)	549
HpyAV	CCTTC	5 cut(s)	127, 275, 281, 401, 427
HpyCH4III	ACNGT	2 cut(s)	152, 205
HpyCH4V	TGCA	7 cut(s)	85, 214, 244, 249, 281, 293, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 241, 633
HpyF3I	CTNAG	2 cut(s)	20, 582
Hsp92II	CATG	4 cut(s)	78, 195, 244, 531
KspAI	GTTAAC	1 cut(s)	549
Kzo9I	GATC	3 cut(s)	13, 410, 491
LmnI	GCTCC	2 cut(s)	235, 428
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	2 cut(s)	469, 693
MaeIII	GTNAC	2 cut(s)	199, 205
MalI	GATC	3 cut(s)	15, 412, 493
MboI	GATC	3 cut(s)	13, 410, 491
MboII	GAAGA	6 cut(s)	8, 73, 362, 459, 566, 571
MfeI	CAATTG	1 cut(s)	86
MflI	RGATCY	3 cut(s)	13, 410, 491
MhlI	GDGCHC	2 cut(s)	42, 425
MluCI	AATT	7 cut(s)	44, 86, 106, 257, 342, 359, 621
MnlI	CCTC	6 cut(s)	220, 325, 412, 436, 493, 517
MseI	TTAA	2 cut(s)	126, 548
MspA1I	CMGCKG	1 cut(s)	636
MspI	CCGG	2 cut(s)	157, 183
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	37, 241, 633
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	13, 410, 491
NlaIII	CATG	4 cut(s)	78, 195, 244, 531
NlaIV	GGNNCC	2 cut(s)	231, 424
NspI	RCATGY	2 cut(s)	195, 244
PciI	ACATGT	1 cut(s)	191
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	457
PflMI	CCANNNNNTGG	1 cut(s)	601
PkrI	GCNGC	1 cut(s)	568
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	231, 424
PspPI	GGNCC	1 cut(s)	159
PsuI	RGATCY	3 cut(s)	13, 410, 491
RsaI	GTAC	2 cut(s)	7, 149
RsaNI	GTAC	2 cut(s)	6, 148
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	126, 548
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	3 cut(s)	13, 410, 491
Sau96I	GGNCC	1 cut(s)	159
ScaI	AGTACT	2 cut(s)	7, 149
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	42, 425
SetI	ASST	5 cut(s)	42, 126, 292, 400, 591
SfaNI	GCATC	2 cut(s)	469, 693
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	7 cut(s)	44, 86, 106, 257, 342, 359, 621
SsiI	CCGC	3 cut(s)	233, 364, 636
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	152, 205
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	7 cut(s)	44, 86, 106, 257, 342, 359, 621
TatI	WGTACW	2 cut(s)	5, 147
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	126, 548
Tru9I	TTAA	2 cut(s)	126, 548
TscAI	CASTG	2 cut(s)	251, 447
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	4 cut(s)	63, 314, 639, 691
TspRI	CASTG	2 cut(s)	251, 447
Van91I	CCANNNNNTGG	1 cut(s)	601
XapI	RAATTY	2 cut(s)	44, 257
XceI	RCATGY	2 cut(s)	195, 244
ZrmI	AGTACT	2 cut(s)	7, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.